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NM_000546.6(TP53):c.22C>A (p.Pro8Thr) AND Li-Fraumeni syndrome 1

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Jun 18, 2022
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001257498.4

Allele description [Variation Report for NM_000546.6(TP53):c.22C>A (p.Pro8Thr)]

NM_000546.6(TP53):c.22C>A (p.Pro8Thr)

Gene:
TP53:tumor protein p53 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.1
Genomic location:
Preferred name:
NM_000546.6(TP53):c.22C>A (p.Pro8Thr)
HGVS:
  • NC_000017.11:g.7676573G>T
  • NG_017013.2:g.15978C>A
  • NM_000546.6:c.22C>AMANE SELECT
  • NM_001126112.3:c.22C>A
  • NM_001126113.3:c.22C>A
  • NM_001126114.3:c.22C>A
  • NM_001126118.2:c.-213C>A
  • NM_001276695.3:c.-96C>A
  • NM_001276696.3:c.-96C>A
  • NM_001276760.3:c.-96C>A
  • NM_001276761.3:c.-96C>A
  • NP_000537.3:p.Pro8Thr
  • NP_000537.3:p.Pro8Thr
  • NP_001119584.1:p.Pro8Thr
  • NP_001119585.1:p.Pro8Thr
  • NP_001119586.1:p.Pro8Thr
  • LRG_321t1:c.22C>A
  • LRG_321:g.15978C>A
  • LRG_321p1:p.Pro8Thr
  • NC_000017.10:g.7579891G>T
  • NM_000546.4:c.22C>A
  • NM_000546.5:c.22C>A
Protein change:
P8T
Links:
dbSNP: rs1597376589
NCBI 1000 Genomes Browser:
rs1597376589
Molecular consequence:
  • NM_001126118.2:c.-213C>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001276695.3:c.-96C>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001276696.3:c.-96C>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001276760.3:c.-96C>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001276761.3:c.-96C>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000546.6:c.22C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126112.3:c.22C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126113.3:c.22C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126114.3:c.22C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Li-Fraumeni syndrome 1 (LFS)
Identifiers:
Gene: 553989; MedGen: C1835398; Orphanet: 524; OMIM: 151623

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001434315Division of Medical Genetics, University of Washington - CSER_CHARM
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Oct 29, 2019) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002582748Genome-Nilou Lab
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Jun 18, 2022) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenonot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Division of Medical Genetics, University of Washington - CSER_CHARM, SCV001434315.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

To our knowledge, this sequence variant has not been previously reported in the literature. This variant is not present in population databases (https://gnomad.broadinstitute.org/). In silico analyses indicate that this variant does not alter protein structure/function. Thus, it is unknown at this time whether this variant increases cancer risk. PM2; BP4

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenonot providednot providednot providednot providednot providednot providednot provided

From Genome-Nilou Lab, SCV002582748.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenonot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024