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NM_000475.5(NR0B1):c.1411T>C (p.Ter471Gln) AND Congenital adrenal hypoplasia, X-linked

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Sep 27, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001257092.1

Allele description [Variation Report for NM_000475.5(NR0B1):c.1411T>C (p.Ter471Gln)]

NM_000475.5(NR0B1):c.1411T>C (p.Ter471Gln)

Gene:
NR0B1:nuclear receptor subfamily 0 group B member 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xp21.2
Genomic location:
Preferred name:
NM_000475.5(NR0B1):c.1411T>C (p.Ter471Gln)
HGVS:
  • NC_000023.11:g.30304581A>G
  • NG_009814.1:g.9798T>C
  • NM_000475.5:c.1411T>CMANE SELECT
  • NP_000466.2:p.Ter471Gln
  • LRG_858t1:c.1411T>C
  • LRG_858:g.9798T>C
  • LRG_858p1:p.Ter471Gln
  • NC_000023.10:g.30322698A>G
Links:
dbSNP: rs1926485824
NCBI 1000 Genomes Browser:
rs1926485824
Molecular consequence:
  • NM_000475.5:c.1411T>C - stop lost - [Sequence Ontology: SO:0001578]
Functional consequence:
C-terminal protein elongation [Variation Ontology: 0125]

Condition(s)

Name:
Congenital adrenal hypoplasia, X-linked (AHC)
Synonyms:
ADRENAL HYPOPLASIA, CONGENITAL, WITH HYPOGONADOTROPIC HYPOGONADISM; X-linked AHC; Adrenal hypoplasia, congenital; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010264; MedGen: C0342482; OMIM: 300200

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001432218Department of Endocrinology, Metabolism and Genetics, Henan Children's Hospital, Children's Hospital Affiliated to Zhengzhou University
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Sep 27, 2016)
maternalresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalyes1not providednot providednot providednot providedresearch

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Department of Endocrinology, Metabolism and Genetics, Henan Children's Hospital, Children's Hospital Affiliated to Zhengzhou University, SCV001432218.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
11not providednot providedresearch PubMed (1)

Description

The novel DAX1 stop-loss variant: c.1411T>C preceded the rare prolonged precocious puberty and primary adrenal insufficiency symptoms in the adrenal hypoplasia congenital boy. The precocious puberty symptoms recorded since at the boy's age of 5.9 yrs lasted till 15.1 yrs of age. This clinical inference contradicts the earlier case studies J.H.D. Bassett et al., 1999 and Okuhara et al., 2008 in which the adrenal hypoplasia congenital boys developed precocious puberty between 17 years to 18 years of age. Moreover, at 15.1 yrs of age: the boy showed the male stereotype characteristics of an adult-hood with the increased serum concentrations of total testosterone; luteinising hormones; follicle-stimulating hormones; adrenocorticotropic hormones; and the hyper-activation of the hypothalamic-pituitary-gonadal/adrenal axis diagnosed at the pre-pubertal stage. The stop-loss variant: c.1411T>C/p.X471Q by adding extra 18 amino acids at the C terminal domain of each chain A and chain B monomers of DAX1 homodimer is more likely to disturb the homodimer orientation. Indeed, this could effectively hinder the DAX1 functional interaction with the steroidogenic factor 1 (SF1) protein crucial in regulating the hypothalamic-pituitary-gonadal/adrenal axis responses via neuronal nitric oxide synthetase activation. This mechanistic hindrance paved by the disturbed DAX1-SF1 protein interactions could precede the prolonged precocious puberty in the adrenal hypoplasia congenital boy.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Apr 23, 2022