U.S. flag

An official website of the United States government

NM_000527.5(LDLR):c.1019G>T (p.Cys340Phe) AND Hypercholesterolemia, familial, 1

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Mar 10, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001255940.1

Allele description [Variation Report for NM_000527.5(LDLR):c.1019G>T (p.Cys340Phe)]

NM_000527.5(LDLR):c.1019G>T (p.Cys340Phe)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.1019G>T (p.Cys340Phe)
HGVS:
  • NC_000019.10:g.11110730G>T
  • NG_009060.1:g.26350G>T
  • NM_000527.5:c.1019G>TMANE SELECT
  • NM_001195798.2:c.1019G>T
  • NM_001195799.2:c.896G>T
  • NM_001195800.2:c.515G>T
  • NM_001195803.2:c.638G>T
  • NP_000518.1:p.Cys340Phe
  • NP_001182727.1:p.Cys340Phe
  • NP_001182728.1:p.Cys299Phe
  • NP_001182729.1:p.Cys172Phe
  • NP_001182732.1:p.Cys213Phe
  • LRG_274t1:c.1019G>T
  • LRG_274:g.26350G>T
  • NC_000019.9:g.11221406G>T
  • NM_000527.4:c.1019G>T
Protein change:
C172F
Links:
dbSNP: rs755757866
NCBI 1000 Genomes Browser:
rs755757866
Molecular consequence:
  • NM_000527.5:c.1019G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.1019G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.896G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195800.2:c.515G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195803.2:c.638G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hypercholesterolemia, familial, 1
Synonyms:
LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001432587Brunham Lab, Centre for Heart and Lung Innovation, University of British Columbia
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Mar 10, 2019)
germlineresearch

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes2not providednot provided2not providedresearch

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Risk of Premature Atherosclerotic Disease in Patients With Monogenic Versus Polygenic Familial Hypercholesterolemia.

Trinder M, Li X, DeCastro ML, Cermakova L, Sadananda S, Jackson LM, Azizi H, Mancini GBJ, Francis GA, Frohlich J, Brunham LR.

J Am Coll Cardiol. 2019 Jul 30;74(4):512-522. doi: 10.1016/j.jacc.2019.05.043.

PubMed [citation]
PMID:
31345425

Details of each submission

From Brunham Lab, Centre for Heart and Lung Innovation, University of British Columbia, SCV001432587.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (2)
2not provided1not providednot providedresearch PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided
2germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2024