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NM_001365999.1(SZT2):c.4727G>A (p.Arg1576His) AND Seizure

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 24, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001255057.2

Allele description [Variation Report for NM_001365999.1(SZT2):c.4727G>A (p.Arg1576His)]

NM_001365999.1(SZT2):c.4727G>A (p.Arg1576His)

Gene:
SZT2:SZT2 subunit of KICSTOR complex [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p34.2
Genomic location:
Preferred name:
NM_001365999.1(SZT2):c.4727G>A (p.Arg1576His)
HGVS:
  • NC_000001.11:g.43430742G>A
  • NG_029091.1:g.45858G>A
  • NM_001365999.1:c.4727G>AMANE SELECT
  • NM_015284.4:c.4556G>A
  • NP_001352928.1:p.Arg1576His
  • NP_056099.3:p.Arg1519His
  • NC_000001.10:g.43896413G>A
  • NM_015284.3:c.4556G>A
Protein change:
R1519H
Links:
dbSNP: rs143935839
NCBI 1000 Genomes Browser:
rs143935839
Molecular consequence:
  • NM_001365999.1:c.4727G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_015284.4:c.4556G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Seizure
Synonyms:
Seizures
Identifiers:
MedGen: C0036572; Human Phenotype Ontology: HP:0001250

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001431148New York Genome Center
no assertion criteria provided
Uncertain significance
(Jan 24, 2020)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot provided1not providedclinical testing

Details of each submission

From New York Genome Center, SCV001431148.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2024