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NM_058179.4(PSAT1):c.382C>T (p.Leu128Phe) AND not provided

Germline classification:
not provided (1 submission)
Review status:
no classification provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001254554.1

Allele description [Variation Report for NM_058179.4(PSAT1):c.382C>T (p.Leu128Phe)]

NM_058179.4(PSAT1):c.382C>T (p.Leu128Phe)

Gene:
PSAT1:phosphoserine aminotransferase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q21.2
Genomic location:
Preferred name:
NM_058179.4(PSAT1):c.382C>T (p.Leu128Phe)
HGVS:
  • NC_000009.12:g.78304925C>T
  • NG_012165.1:g.12783C>T
  • NM_021154.5:c.382C>T
  • NM_058179.4:c.382C>TMANE SELECT
  • NP_066977.1:p.Leu128Phe
  • NP_478059.1:p.Leu128Phe
  • NC_000009.11:g.80919841C>T
Protein change:
L128F
Links:
dbSNP: rs763223623
NCBI 1000 Genomes Browser:
rs763223623
Molecular consequence:
  • NM_021154.5:c.382C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_058179.4:c.382C>T - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
  • functionally_normal [Sequence Ontology: SO:0002219] - Comment(s)
  • mutation affecting coding sequence [Sequence Ontology: SO:1000054] - Comment(s)

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001430533Dudley Research Group, Pacific Northwest Research Institute
no classification provided
not providedunknown, not applicableresearch, in vivo

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedresearch
not providednot applicablenot applicablenot providednot providednot providednot providednot providedin vivo

Citations

PubMed

A yeast-based complementation assay elucidates the functional impact of 200 missense variants in human PSAT1.

Sirr A, Lo RS, Cromie GA, Scott AC, Ashmead J, Heyesus M, Dudley AM.

J Inherit Metab Dis. 2020 Jul;43(4):758-769. doi: 10.1002/jimd.12227. Epub 2020 Feb 27.

PubMed [citation]
PMID:
32077105
PMCID:
PMC7444316

Details of each submission

From Dudley Research Group, Pacific Northwest Research Institute, SCV001430533.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (1)
2not providednot providednot providednot providedin vivo PubMed (1)

Description

"Not impaired in assay relative to wildtype."
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided
2not applicablenot applicablenot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022