NM_012062.5(DNM1L):c.1087G>A (p.Gly363Ser) AND Encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Feb 19, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001253719.2

Allele description [Variation Report for NM_012062.5(DNM1L):c.1087G>A (p.Gly363Ser)]

NM_012062.5(DNM1L):c.1087G>A (p.Gly363Ser)

Gene:

DNM1L:dynamin 1 like [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

12p11.21

Genomic location:

Preferred name:

NM_012062.5(DNM1L):c.1087G>A (p.Gly363Ser)

HGVS:

NC_000012.12:g.32731021G>A
NG_012219.1:g.56819G>A
NM_001278463.2:c.1087G>A
NM_001278464.2:c.1126G>A
NM_001278465.2:c.1126G>A
NM_001278466.2:c.478G>A
NM_001330380.2:c.1126G>A
NM_005690.5:c.1087G>A
NM_012062.5:c.1087G>AMANE SELECT
NM_012063.4:c.1087G>A
NP_001265392.1:p.Gly363Ser
NP_001265392.1:p.Gly363Ser
NP_001265393.1:p.Gly376Ser
NP_001265394.1:p.Gly376Ser
NP_001265395.1:p.Gly160Ser
NP_001317309.1:p.Gly376Ser
NP_005681.2:p.Gly363Ser
NP_036192.2:p.Gly363Ser
NP_036193.2:p.Gly363Ser
NC_000012.11:g.32883955G>A
NM_001278463.1:c.1087G>A

Protein change:

G160S

Links:

dbSNP: rs1954520736

NCBI 1000 Genomes Browser:

rs1954520736

Molecular consequence:

NM_001278463.2:c.1087G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001278464.2:c.1126G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001278465.2:c.1126G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001278466.2:c.478G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001330380.2:c.1126G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_005690.5:c.1087G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_012062.5:c.1087G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_012063.4:c.1087G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
Synonyms:: Encephalopathy due to defective mitochondrial and peroxisomal fission 1
Identifiers:: MONDO: MONDO:0013726; MedGen: C3280660; Orphanet: 330050; OMIM: 614388

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001429571	Institute of Human Genetics, University of Leipzig Medical Center	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Feb 19, 2021)	de novo	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001429571

Institute of Human Genetics, University of Leipzig Medical Center

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Feb 19, 2021)

de novo

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	de novo	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Institute of Human Genetics, University of Leipzig Medical Center, SCV001429571.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)
2	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This variant was identified as de novo (maternity and paternity confirmed).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	de novo	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided
2	de novo	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 17, 2022

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