U.S. flag

An official website of the United States government

NM_000545.8(HNF1A):c.862G>T (p.Gly288Trp) AND Maturity-onset diabetes of the young type 3

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 22, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001248890.3

Allele description [Variation Report for NM_000545.8(HNF1A):c.862G>T (p.Gly288Trp)]

NM_000545.8(HNF1A):c.862G>T (p.Gly288Trp)

Gene:
HNF1A:HNF1 homeobox A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q24.31
Genomic location:
Preferred name:
NM_000545.8(HNF1A):c.862G>T (p.Gly288Trp)
HGVS:
  • NC_000012.12:g.120994312G>T
  • NG_011731.2:g.20567G>T
  • NM_000545.8:c.862G>TMANE SELECT
  • NM_001306179.2:c.862G>T
  • NP_000536.6:p.Gly288Trp
  • NP_001293108.2:p.Gly288Trp
  • LRG_522t1:c.862G>T
  • LRG_522:g.20567G>T
  • NC_000012.11:g.121432115G>T
  • NC_000012.11:g.121432115G>T
  • NM_000545.5:c.862G>T
  • NM_001306179.1:c.862G>T
Protein change:
G288W
Links:
dbSNP: rs539507291
NCBI 1000 Genomes Browser:
rs539507291
Molecular consequence:
  • NM_000545.8:c.862G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001306179.2:c.862G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Maturity-onset diabetes of the young type 3
Synonyms:
Diabetes mellitus MODY type 3; MODY hepatocyte nuclear factor-1-alpha related; MODY type 3; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010894; MedGen: C1838100; Orphanet: 552; OMIM: 600496

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001422570Broad Center for Mendelian Genomics, Broad Institute of MIT and Harvard
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Jan 22, 2020) 		germlinecuration

PubMed (1)
[See all records that cite this PMID]

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedcuration

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Broad Center for Mendelian Genomics, Broad Institute of MIT and Harvard, SCV001422570.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcuration PubMed (1)

Description

The p.Gly288Trp variant in HNF1A has been reported in at least 1 individual with maturity-onset diabetes of the young (PMID: 25306193), and has been identified in 0.030% (3/9944) of Ashkenazi Jewish chromosomes and 0.011% (13/122942) of European (non-Finnish) chromosomes by the Genome Aggregation Database (gnomAD, http://gnomad.broadinstitute.org; dbSNP rs539507291). Computational prediction tools and conservation analyses suggest that this variant may impact the protein, though this information is not predictive enough to determine pathogenicity. In summary, while the clinical significance of the p.Gly288Trp variant is uncertain, these data suggest that it is more likely to be benign. ACMG/AMP Criteria applied: BA1, PP3 (Richards 2015).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024