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NM_000390.4(CHM):c.498_499dup (p.Leu167fs) AND Choroideremia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 9, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001199667.1

Allele description [Variation Report for NM_000390.4(CHM):c.498_499dup (p.Leu167fs)]

NM_000390.4(CHM):c.498_499dup (p.Leu167fs)

Gene:
CHM:CHM Rab escort protein [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
Xq21.2
Genomic location:
Preferred name:
NM_000390.4(CHM):c.498_499dup (p.Leu167fs)
HGVS:
  • NC_000023.11:g.85963868GC[3]
  • NC_000023.11:g.85963868_85963869GC[3]
  • NG_009874.2:g.88692GC[3]
  • NM_000390.4:c.498_499dupMANE SELECT
  • NM_001320959.1:c.54_55dup
  • NM_001362517.1:c.54_55dup
  • NM_001362518.2:c.54_55dup
  • NM_001362519.1:c.54_55dup
  • NP_000381.1:p.Leu167fs
  • NP_001307888.1:p.Leu19fs
  • NP_001349446.1:p.Leu19fs
  • NP_001349447.1:p.Leu19fs
  • NP_001349448.1:p.Leu19fs
  • LRG_699t1:c.498_499dup
  • LRG_699:g.88692GC[3]
  • NC_000023.10:g.85218873GC[3]
  • NM_000390.2:c.498_499dup
Protein change:
L167fs
Links:
dbSNP: rs1930428430
NCBI 1000 Genomes Browser:
rs1930428430
Molecular consequence:
  • NM_000390.4:c.498_499dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001320959.1:c.54_55dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001362517.1:c.54_55dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001362518.2:c.54_55dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001362519.1:c.54_55dup - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Choroideremia (CHM)
Synonyms:
Progressive tapetochoroidal dystrophy
Identifiers:
MONDO: MONDO:0010557; MedGen: C0008525; Orphanet: 180; OMIM: 303100; Human Phenotype Ontology: HP:0001139

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001162457Molecular Genetics Laboratory, Institute for Ophthalmic Research
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Jan 9, 2020) 		germlineresearch

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedresearch

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Molecular Genetics Laboratory, Institute for Ophthalmic Research, SCV001162457.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022