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NM_000243.3(MEFV):c.343C>A (p.Pro115Thr) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 28, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001193206.2

Allele description [Variation Report for NM_000243.3(MEFV):c.343C>A (p.Pro115Thr)]

NM_000243.3(MEFV):c.343C>A (p.Pro115Thr)

Gene:
MEFV:MEFV innate immunity regulator, pyrin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p13.3
Genomic location:
Preferred name:
NM_000243.3(MEFV):c.343C>A (p.Pro115Thr)
HGVS:
  • NC_000016.10:g.3254725G>T
  • NG_007871.1:g.6903C>A
  • NM_000243.3:c.343C>AMANE SELECT
  • NM_001198536.2:c.277+1586C>A
  • NP_000234.1:p.Pro115Thr
  • NP_000234.1:p.Pro115Thr
  • LRG_190t1:c.343C>A
  • LRG_190:g.6903C>A
  • LRG_190p1:p.Pro115Thr
  • NC_000016.9:g.3304725G>T
  • NM_000243.2:c.343C>A
Protein change:
P115T
Links:
dbSNP: rs147557169
NCBI 1000 Genomes Browser:
rs147557169
Molecular consequence:
  • NM_001198536.2:c.277+1586C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000243.3:c.343C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001361912Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Jul 28, 2022)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Monogenic Autoinflammatory Diseases with Mendelian Inheritance: Genes, Mutations, and Genotype/Phenotype Correlations.

Martorana D, Bonatti F, Mozzoni P, Vaglio A, Percesepe A.

Front Immunol. 2017;8:344. doi: 10.3389/fimmu.2017.00344. Review.

PubMed [citation]
PMID:
28421071
PMCID:
PMC5376573

The spectrum of Familial Mediterranean Fever gene (MEFV) mutations and genotypes in Iran, and report of a novel missense variant (R204H).

Ebadi N, Shakoori A, Razipour M, Salmaninejad A, Zarifian Yeganeh R, Mehrabi S, Raeeskarami SR, Khaleghian M, Azhideh H.

Eur J Med Genet. 2017 Dec;60(12):701-705. doi: 10.1016/j.ejmg.2017.09.007. Epub 2017 Sep 21.

PubMed [citation]
PMID:
28943464

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV001361912.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)

Description

Variant summary: MEFV c.343C>A (p.Pro115Thr) results in a non-conservative amino acid change in the encoded protein sequence. Four of five in-silico tools predict a benign effect of the variant on protein function. The variant allele was found at a frequency of 0.0004 in 247544 control chromosomes (gnomAD). This frequency is not significantly higher than expected for a pathogenic variant in MEFV causing Familial Mediterranean Fever (0.0004 vs 0.022), allowing no conclusion about variant significance. The variant, c.343C>A, has been reported in the literature in individuals affected with Familial Mediterranean Fever (example, Ebadi_2017). This report however, does not provide unequivocal conclusions about association of the variant with Familial Mediterranean Fever. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. Five submitters have provided clinical-significance assessments for this variant to ClinVar after 2014 without evidence for independent evaluation and classified this variant as uncertain significance (n=4) (VUS, n=1). Based on the evidence outlined above, the variant was classified as uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 20, 2024