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NM_000256.3(MYBPC3):c.1505G>A (p.Arg502Gln) AND Cardiomyopathy

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Jan 18, 2021
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001190403.6

Allele description [Variation Report for NM_000256.3(MYBPC3):c.1505G>A (p.Arg502Gln)]

NM_000256.3(MYBPC3):c.1505G>A (p.Arg502Gln)

Gene:
MYBPC3:myosin binding protein C3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p11.2
Genomic location:
Preferred name:
NM_000256.3(MYBPC3):c.1505G>A (p.Arg502Gln)
Other names:
p.R502Q:CGG>CAG
HGVS:
  • NC_000011.10:g.47342697C>T
  • NG_007667.1:g.15006G>A
  • NM_000256.3:c.1505G>AMANE SELECT
  • NP_000247.2:p.Arg502Gln
  • LRG_386t1:c.1505G>A
  • LRG_386:g.15006G>A
  • LRG_386p1:p.Arg502Gln
  • NC_000011.9:g.47364248C>T
  • Q14896:p.Arg502Gln
  • c.1505G>A
  • p.(Arg502Gln)
Protein change:
R502Q
Links:
UniProtKB: Q14896#VAR_027881; dbSNP: rs397515907
NCBI 1000 Genomes Browser:
rs397515907
Molecular consequence:
  • NM_000256.3:c.1505G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiomyopathy (CMYO)
Synonyms:
Cardiomyopathies
Identifiers:
MONDO: MONDO:0004994; MedGen: C0878544; Human Phenotype Ontology: HP:0001638

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001357883Color Diagnostics, LLC DBA Color Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jul 20, 2019)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002042130CHEO Genetics Diagnostic Laboratory, Children's Hospital of Eastern Ontario
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jan 18, 2021)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Color Diagnostics, LLC DBA Color Health, SCV001357883.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This missense variant replaces arginine with glutamine at codon 502 in the Ig-like domain C3 of the MYBPC3 protein. Computational prediction tools and conservation analyses suggest that this variant may have a deleterious impact on protein function. Computational splicing tools suggest that this variant may not impact RNA splicing. To our knowledge, functional assays have not been performed for this variant. This variant has been reported in over 20 individuals affected with hypertrophic cardiomyopathy (PMID: 20433692, 22112859, 9562578, 16566405, 18403758, 18533079, 20433692, 22267749, 22857948, 27600940, 28193612). It has been shown that this variant segregates with hypertrophic cardiomyopathy in multiple unrelated families (PMID: 20433692, 22112859). This variant has not been identified in the general population by the Genome Aggregation Database (gnomAD). A different missense variant occurring at the same codon, p.Arg502Trp, is known to be disease-causing (Clinvar variation ID 42540), indicating that arginine at this position is important for protein function. Based on available evidence, this variant is classified as Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From CHEO Genetics Diagnostic Laboratory, Children's Hospital of Eastern Ontario, SCV002042130.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024