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NM_000256.3(MYBPC3):c.1166A>T (p.Asp389Val) AND Cardiomyopathy

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 9, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001186946.4

Allele description [Variation Report for NM_000256.3(MYBPC3):c.1166A>T (p.Asp389Val)]

NM_000256.3(MYBPC3):c.1166A>T (p.Asp389Val)

Gene:
MYBPC3:myosin binding protein C3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p11.2
Genomic location:
Preferred name:
NM_000256.3(MYBPC3):c.1166A>T (p.Asp389Val)
HGVS:
  • NC_000011.10:g.47343549T>A
  • NG_007667.1:g.14154A>T
  • NM_000256.3:c.1166A>TMANE SELECT
  • NP_000247.2:p.Asp389Val
  • LRG_386t1:c.1166A>T
  • LRG_386:g.14154A>T
  • LRG_386p1:p.Asp389Val
  • NC_000011.9:g.47365100T>A
  • NC_000011.9:g.47365100T>A
Protein change:
D389V
Links:
dbSNP: rs1412710023
NCBI 1000 Genomes Browser:
rs1412710023
Molecular consequence:
  • NM_000256.3:c.1166A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiomyopathy (CMYO)
Synonyms:
Cardiomyopathies
Identifiers:
MONDO: MONDO:0004994; MedGen: C0878544; Human Phenotype Ontology: HP:0001638

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001353561Color Diagnostics, LLC DBA Color Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Dec 9, 2022)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Association of Cardiomyopathy With MYBPC3 D389V and MYBPC3Δ25bpIntronic Deletion in South Asian Descendants.

Viswanathan SK, Puckelwartz MJ, Mehta A, Ramachandra CJA, Jagadeesan A, Fritsche-Danielson R, Bhat RV, Wong P, Kandoi S, Schwanekamp JA, Kuffel G, Pesce LL, Zilliox MJ, Durai UNB, Verma RS, Molokie RE, Suresh DP, Khoury PR, Thomas A, Sanagala T, Tang HC, Becker RC, et al.

JAMA Cardiol. 2018 Jun 1;3(6):481-488. doi: 10.1001/jamacardio.2018.0618.

PubMed [citation]
PMID:
29641836
PMCID:
PMC6054452

Assessment of the Contribution of a Thermodynamic and Mechanical Destabilization of Myosin-Binding Protein C Domain C2 to the Pathomechanism of Hypertrophic Cardiomyopathy-Causing Double Mutation MYBPC3(Δ25bp/D389V).

Schwäbe FV, Peter EK, Taft MH, Manstein DJ.

Int J Mol Sci. 2021 Nov 4;22(21). doi:pii: 11949. 10.3390/ijms222111949.

PubMed [citation]
PMID:
34769381
PMCID:
PMC8584774
See all PubMed Citations (3)

Details of each submission

From Color Diagnostics, LLC DBA Color Health, SCV001353561.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

This missense variant replaces aspartic acid with valine at codon 389 of the MYBPC3 protein. Computational prediction suggests that this variant may not impact protein structure and function (internally defined REVEL score threshold <= 0.5, PMID: 27666373). This variant presents in tandem on the same allele as the likely benign MYBPC3 variant c.3628-41_3628-17del25 (MYBPC3delta25bp). One functional study in wild boar tissue showed that this variant may lead to faster destabilization of sarcomere function than MYBPC3delta25bp alone (PMID: 34769381). This variant has not been reported in individuals affected with MYBPC3-related disorders in the literature. Echocardiographic findings from a study screening US South Asian individuals have indicated that left ventricular ejection fraction and left ventricular fractional shortening were significantly increased in the Asp389Val carriers compared to non-carriers, consistent with a hyperdynamic state described in early hypertrophic cardiomyopathy (PMID: 29641836). At a cellular level, cardiomyocytes derived from induced pluripotent stem cells from Asp389Val carriers were significantly more hypertrophic and showed increased frequency of arrhythmic cells as well as ectopic Ca2+ transients compared with control cells (PMID: 29641836). This variant has been identified in 1/244882 chromosomes in the general population by the Genome Aggregation Database (gnomAD). The available evidence is insufficient to determine the role of this variant in disease conclusively. Therefore, this variant is classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024