NM_016203.4(PRKAG2):c.359G>A (p.Arg120His) AND Cardiomyopathy

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 9, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001176900.4

Allele description [Variation Report for NM_016203.4(PRKAG2):c.359G>A (p.Arg120His)]

NM_016203.4(PRKAG2):c.359G>A (p.Arg120His)

Gene:

PRKAG2:protein kinase AMP-activated non-catalytic subunit gamma 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

7q36.1

Genomic location:

Preferred name:

NM_016203.4(PRKAG2):c.359G>A (p.Arg120His)

Other names:

p.Arg120His

HGVS:

NC_000007.14:g.151781259C>T
NG_007486.2:g.100973G>A
NM_001040633.2:c.227G>A
NM_016203.4:c.359G>AMANE SELECT
NP_001035723.1:p.Arg76His
NP_057287.2:p.Arg120His
LRG_430t1:c.359G>A
LRG_430:g.100973G>A
LRG_430p1:p.Arg120His
NC_000007.13:g.151478345C>T
NG_007486.1:g.100972G>A
NM_016203.3:c.359G>A

Protein change:

R120H

Links:

dbSNP: rs775756069

NCBI 1000 Genomes Browser:

rs775756069

Molecular consequence:

NM_001040633.2:c.227G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_016203.4:c.359G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Cardiomyopathy (CMYO)
Synonyms:: Cardiomyopathies
Identifiers:: MONDO: MONDO:0004994; MedGen: C0878544; Human Phenotype Ontology: HP:0001638

Recent activity

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ILF3-DT ILF3 divergent transcript [Homo sapiens]
ILF3-DT ILF3 divergent transcript [Homo sapiens]
Gene ID:147727

Gene
Gene Links for GEO Profiles (Select 107267163) (1)
Gene
Homo sapiens FP3235 mRNA, complete cds
Homo sapiens FP3235 mRNA, complete cds
gi|33341687|gb|AF370379.1|

Nucleotide
Lutzomyia longipalpis isolate SR_M1_2022 chromosome 3
Lutzomyia longipalpis isolate SR_M1_2022 chromosome 3
gi|2274190319|gb|CP101404.1|

Nucleotide
Neisseria meningitidis strain MCRJ108 scaffold_367, whole genome shotgun sequenc...
Neisseria meningitidis strain MCRJ108 scaffold_367, whole genome shotgun sequence
gi|2212447502|ref|NZ_VDCG01000368.1 |WGS:NZ_VDCG01|scaffold_367

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001340998	Color Diagnostics, LLC DBA Color Health	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Mar 9, 2023)	germline	clinical testing	PubMed (2) [See all records that cite these PMIDs] 32233023, 25741868

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001340998

Color Diagnostics, LLC DBA Color Health

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Mar 9, 2023)

germline

clinical testing

PubMed (2)
[See all records that cite these PMIDs]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Wolff-Parkinson-White syndrome: De novo variants and evidence for mutational burden in genes associated with atrial fibrillation.

Coban-Akdemir ZH, Charng WL, Azamian M, Paine IS, Punetha J, Grochowski CM, Gambin T, Valdes SO, Cannon B, Zapata G, Hernandez PP, Jhangiani S, Doddapaneni H, Hu J, Boricha F, Muzny DM, Boerwinkle E, Yang Y, Gibbs RA, Posey JE, Wehrens XHT, Belmont JW, et al.

Am J Med Genet A. 2020 Jun;182(6):1387-1399. doi: 10.1002/ajmg.a.61571. Epub 2020 Mar 31.

PubMed [citation]

PMID:: 32233023
PMCID:: PMC7275694

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Color Diagnostics, LLC DBA Color Health, SCV001340998.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (2)

Description

This variant is located in the PRKAG2 protein. Computational prediction is inconclusive regarding the impact of this variant on protein structure and function (internally defined REVEL score threshold 0.5 < inconclusive < 0.7, PMID: 27666373). To our knowledge, functional studies have not been reported for this variant. This variant has been reported in an individual affected with Wolff-Parkinson-White syndrome (PMID: 32233023). This variant has been identified in 29/251228 chromosomes in the general population by the Genome Aggregation Database (gnomAD). The available evidence is insufficient to determine the role of this variant in disease conclusively. Therefore, this variant is classified as a Variant of Uncertain Significance.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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