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NM_000404.4(GLB1):c.380G>A (p.Cys127Tyr) AND GM1 gangliosidosis

Germline classification:
not provided (1 submission)
Review status:
no classification provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001175297.1

Allele description [Variation Report for NM_000404.4(GLB1):c.380G>A (p.Cys127Tyr)]

NM_000404.4(GLB1):c.380G>A (p.Cys127Tyr)

Gene:
GLB1:galactosidase beta 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p22.3
Genomic location:
Preferred name:
NM_000404.4(GLB1):c.380G>A (p.Cys127Tyr)
HGVS:
  • NC_000003.12:g.33068836C>T
  • NG_009005.1:g.33367G>A
  • NM_000404.4:c.380G>AMANE SELECT
  • NM_001079811.3:c.290G>A
  • NM_001135602.3:c.246-3279G>A
  • NM_001317040.2:c.524G>A
  • NM_001393580.1:c.380G>A
  • NP_000395.3:p.Cys127Tyr
  • NP_001073279.2:p.Cys97Tyr
  • NP_001303969.2:p.Cys175Tyr
  • NP_001380509.1:p.Cys127Tyr
  • NC_000003.11:g.33110328C>T
Protein change:
C127Y
Links:
dbSNP: rs1699791081
NCBI 1000 Genomes Browser:
rs1699791081
Molecular consequence:
  • NM_001135602.3:c.246-3279G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000404.4:c.380G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001079811.3:c.290G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317040.2:c.524G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001393580.1:c.380G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
GM1 gangliosidosis
Synonyms:
Beta galactosidase 1 deficiency; GLB 1 deficiency
Identifiers:
MONDO: MONDO:0018149; MedGen: C0085131

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001338921GenomeConnect - GM1
no classification provided
not providedmaternalphenotyping only

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalyesnot providednot providednot providednot providednot providedphenotyping only

Details of each submission

From GenomeConnect - GM1, SCV001338921.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedphenotyping onlynot provided

Description

Variant interpreted as Likely pathogenic and reported on 10-18-2019 by Lab or GTR ID Columbia University Precision Genomics Laboratory. GenomeConnect-GM1 assertions are reported exactly as they appear on the patient-provided report from the testing laboratory. Registry team members make no attempt to reinterpret the clinical significance of the variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022