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NM_000038.6(APC):c.7036C>T (p.Pro2346Ser) AND APC-Associated Polyposis Disorders

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 9, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001153053.12

Allele description [Variation Report for NM_000038.6(APC):c.7036C>T (p.Pro2346Ser)]

NM_000038.6(APC):c.7036C>T (p.Pro2346Ser)

Gene:
APC:APC regulator of WNT signaling pathway [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q22.2
Genomic location:
Preferred name:
NM_000038.6(APC):c.7036C>T (p.Pro2346Ser)
Other names:
p.P2346S:CCA>TCA
HGVS:
  • NC_000005.10:g.112842630C>T
  • NG_008481.4:g.155110C>T
  • NM_000038.6:c.7036C>TMANE SELECT
  • NM_001127510.3:c.7036C>T
  • NM_001127511.3:c.6982C>T
  • NM_001354895.2:c.7036C>T
  • NM_001354896.2:c.7090C>T
  • NM_001354897.2:c.7066C>T
  • NM_001354898.2:c.6961C>T
  • NM_001354899.2:c.6952C>T
  • NM_001354900.2:c.6913C>T
  • NM_001354901.2:c.6859C>T
  • NM_001354902.2:c.6763C>T
  • NM_001354903.2:c.6733C>T
  • NM_001354904.2:c.6658C>T
  • NM_001354905.2:c.6556C>T
  • NM_001354906.2:c.6187C>T
  • NP_000029.2:p.Pro2346Ser
  • NP_001120982.1:p.Pro2346Ser
  • NP_001120983.2:p.Pro2328Ser
  • NP_001341824.1:p.Pro2346Ser
  • NP_001341825.1:p.Pro2364Ser
  • NP_001341826.1:p.Pro2356Ser
  • NP_001341827.1:p.Pro2321Ser
  • NP_001341828.1:p.Pro2318Ser
  • NP_001341829.1:p.Pro2305Ser
  • NP_001341830.1:p.Pro2287Ser
  • NP_001341831.1:p.Pro2255Ser
  • NP_001341832.1:p.Pro2245Ser
  • NP_001341833.1:p.Pro2220Ser
  • NP_001341834.1:p.Pro2186Ser
  • NP_001341835.1:p.Pro2063Ser
  • LRG_130t1:c.7036C>T
  • LRG_130:g.155110C>T
  • NC_000005.9:g.112178327C>T
  • NM_000038.4:c.7036C>T
  • NM_000038.5:c.7036C>T
  • p.P2346S
Protein change:
P2063S
Links:
dbSNP: rs200756935
NCBI 1000 Genomes Browser:
rs200756935
Molecular consequence:
  • NM_000038.6:c.7036C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127510.3:c.7036C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127511.3:c.6982C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354895.2:c.7036C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354896.2:c.7090C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354897.2:c.7066C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354898.2:c.6961C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354899.2:c.6952C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354900.2:c.6913C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354901.2:c.6859C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354902.2:c.6763C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354903.2:c.6733C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354904.2:c.6658C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354905.2:c.6556C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354906.2:c.6187C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
APC-Associated Polyposis Disorders
Identifiers:
MedGen: CN239210

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001314301Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification Criteria 13 December 2019)
Uncertain significance
(Sep 9, 2019)
germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sequencing an Ashkenazi reference panel supports population-targeted personal genomics and illuminates Jewish and European origins.

Carmi S, Hui KY, Kochav E, Liu X, Xue J, Grady F, Guha S, Upadhyay K, Ben-Avraham D, Mukherjee S, Bowen BM, Thomas T, Vijai J, Cruts M, Froyen G, Lambrechts D, Plaisance S, Van Broeckhoven C, Van Damme P, Van Marck H, Barzilai N, Darvasi A, et al.

Nat Commun. 2014 Sep 9;5:4835. doi: 10.1038/ncomms5835.

PubMed [citation]
PMID:
25203624
PMCID:
PMC4164776

Germline variation in cancer-susceptibility genes in a healthy, ancestrally diverse cohort: implications for individual genome sequencing.

Bodian DL, McCutcheon JN, Kothiyal P, Huddleston KC, Iyer RK, Vockley JG, Niederhuber JE.

PLoS One. 2014;9(4):e94554. doi: 10.1371/journal.pone.0094554.

PubMed [citation]
PMID:
24728327
PMCID:
PMC3984285
See all PubMed Citations (4)

Details of each submission

From Illumina Laboratory Services, Illumina, SCV001314301.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). Publications were found based on this search. However, the evidence from the literature, in combination with allele frequency data from public databases where available, was not sufficient to rule this variant in or out of causing disease. Therefore, this variant is classified as a variant of unknown significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024