NM_001127671.2(LIFR):c.3060G>A (p.Glu1020=) AND Stuve-Wiedemann syndrome

Germline classification:: Uncertain significance (2 submissions)
Last evaluated:: Apr 27, 2017
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001151741.5

Allele description [Variation Report for NM_001127671.2(LIFR):c.3060G>A (p.Glu1020=)]

NM_001127671.2(LIFR):c.3060G>A (p.Glu1020=)

Gene:

LIFR:LIF receptor subunit alpha [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

5p13.1

Genomic location:

Preferred name:

NM_001127671.2(LIFR):c.3060G>A (p.Glu1020=)

HGVS:

NC_000005.10:g.38481829C>T
NG_011817.1:g.118577G>A
NM_001127671.2:c.3060G>AMANE SELECT
NM_001364297.2:c.3060G>A
NM_001364298.2:c.3027G>A
NM_002310.6:c.3060G>A
NP_001121143.1:p.Glu1020=
NP_001351226.1:p.Glu1020=
NP_001351227.1:p.Glu1009=
NP_002301.1:p.Glu1020=
NC_000005.9:g.38481931C>T
NM_002310.5:c.3060G>A

Links:

dbSNP: rs537706381

NCBI 1000 Genomes Browser:

rs537706381

Molecular consequence:

NM_001127671.2:c.3060G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001364297.2:c.3060G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001364298.2:c.3027G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_002310.6:c.3060G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Stuve-Wiedemann syndrome
Synonyms:: Schwartz-Jampel syndrome type 2; Schwartz-Jampel syndrome neonatal; Stuve-Wiedemann/Schwartz-Jampel type 2 syndrome; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0031280; MedGen: C0796176; Orphanet: 3206; OMIM: PS601559

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001312906	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification Criteria 13 December 2019)	Uncertain significance (Apr 27, 2017)	germline	clinical testing	Citation Link,
SCV001452984	Natera, Inc.	no assertion criteria provided	Likely benign (Apr 20, 2020)	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001312906

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification Criteria 13 December 2019)

Uncertain significance
(Apr 27, 2017)

germline

clinical testing

Citation Link,

SCV001452984

Natera, Inc.

no assertion criteria provided

Likely benign
(Apr 20, 2020)

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV001312906.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases did not allow this variant to be ruled in or out of causing disease. Therefore, this variant is classified as a variant of unknown significance.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Natera, Inc., SCV001452984.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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