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NM_000103.4(CYP19A1):c.*1888A>T AND Aromatase deficiency

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 27, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001118382.4

Allele description [Variation Report for NM_000103.4(CYP19A1):c.*1888A>T]

NM_000103.4(CYP19A1):c.*1888A>T

Genes:
MIR4713HG:MIR4713 host gene [Gene - HGNC]
CYP19A1:cytochrome P450 family 19 subfamily A member 1 [Gene - OMIM - HGNC]
PIRC66:piwi-interacting RNA cluster 66 [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q21.2
Genomic location:
Preferred name:
NM_000103.4(CYP19A1):c.*1888A>T
HGVS:
  • NC_000015.10:g.51208920T>A
  • NG_007982.1:g.134679A>T
  • NM_000103.4:c.*1888A>TMANE SELECT
  • NM_001347248.1:c.*1888A>T
  • NM_001347249.2:c.*1888A>T
  • NM_001347250.2:c.*1888A>T
  • NM_001347251.2:c.*1888A>T
  • NM_001347252.2:c.*1888A>T
  • NM_001347253.2:c.*1888A>T
  • NM_001347254.2:c.*1888A>T
  • NM_001347255.2:c.*1888A>T
  • NM_001347256.2:c.*1888A>T
  • NM_031226.3:c.*1888A>T
  • NC_000015.9:g.51501117T>A
  • NM_031226.2:c.*1888A>T
Links:
dbSNP: rs4275794
NCBI 1000 Genomes Browser:
rs4275794
Molecular consequence:
  • NM_000103.4:c.*1888A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001347248.1:c.*1888A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001347249.2:c.*1888A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001347250.2:c.*1888A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001347251.2:c.*1888A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001347252.2:c.*1888A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001347253.2:c.*1888A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001347254.2:c.*1888A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001347255.2:c.*1888A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001347256.2:c.*1888A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_031226.3:c.*1888A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]

Condition(s)

Name:
Aromatase deficiency
Synonyms:
Increased aromatase activity; Pseudohermaphroditism, female, due to placental aromatase deficiency
Identifiers:
MONDO: MONDO:0013301; MedGen: C1960539; Orphanet: 91; OMIM: 613546

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001276656Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification Criteria 13 December 2019)		Uncertain significance
(Apr 27, 2017) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Associations between CYP19A1 polymorphisms, Native American ancestry, and breast cancer risk and mortality: the Breast Cancer Health Disparities Study.

Boone SD, Baumgartner KB, Baumgartner RN, Connor AE, Pinkston CM, Rai SN, Riley EC, Hines LM, Giuliano AR, John EM, Stern MC, Torres-Mejía G, Wolff RK, Slattery ML.

Cancer Causes Control. 2014 Nov;25(11):1461-71. doi: 10.1007/s10552-014-0448-5. Epub 2014 Aug 5.

PubMed [citation]
PMID:
25088806
PMCID:
PMC4435673

Details of each submission

From Illumina Laboratory Services, Illumina, SCV001276656.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). Publications were found based on this search. However, the evidence from the literature, in combination with allele frequency data from public databases where available, was not sufficient to rule this variant in or out of causing disease. Therefore, this variant is classified as a variant of unknown significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 9, 2023