NM_000376.3(VDR):c.1121C>G (p.Pro374Arg) AND Vitamin D-dependent rickets type II with alopecia

Germline classification:: Uncertain significance (2 submissions)
Last evaluated:: Apr 27, 2017
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001112342.5

Allele description [Variation Report for NM_000376.3(VDR):c.1121C>G (p.Pro374Arg)]

NM_000376.3(VDR):c.1121C>G (p.Pro374Arg)

Gene:

VDR:vitamin D receptor [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

12q13.11

Genomic location:

Preferred name:

NM_000376.3(VDR):c.1121C>G (p.Pro374Arg)

HGVS:

NC_000012.12:g.47844909G>C
NG_008731.1:g.65123C>G
NM_000376.3:c.1121C>GMANE SELECT
NM_001017535.2:c.1121C>G
NM_001017536.2:c.1271C>G
NM_001364085.2:c.1121C>G
NM_001374661.1:c.1121C>G
NM_001374662.1:c.1121C>G
NP_000367.1:p.Pro374Arg
NP_001017535.1:p.Pro374Arg
NP_001017536.1:p.Pro424Arg
NP_001351014.1:p.Pro374Arg
NP_001361590.1:p.Pro374Arg
NP_001361591.1:p.Pro374Arg
NC_000012.11:g.48238692G>C
NC_000012.11:g.48238692G>C
NM_001017535.1:c.1121C>G

Protein change:

P374R

Links:

dbSNP: rs200556498

NCBI 1000 Genomes Browser:

rs200556498

Molecular consequence:

NM_000376.3:c.1121C>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001017535.2:c.1121C>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001017536.2:c.1271C>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001364085.2:c.1121C>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374661.1:c.1121C>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374662.1:c.1121C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Vitamin D-dependent rickets type II with alopecia (VDDR2A)
Synonyms:: GENERALIZED RESISTANCE TO 1,25-DIHYDROXYVITAMIN D; HYPOCALCEMIC VITAMIN D-RESISTANT RICKETS; PDDR IIA; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0010186; MedGen: C0342646; Orphanet: 93160; OMIM: 277440

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001269996	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification Criteria 13 December 2019)	Uncertain significance (Apr 27, 2017)	germline	clinical testing	Citation Link,
SCV004708180	Molecular Genetics Laboratory, Biocruces Bizkaia Health Research Institute	no assertion criteria provided	Uncertain significance (Mar 8, 2024)	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001269996

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification Criteria 13 December 2019)

Uncertain significance
(Apr 27, 2017)

germline

clinical testing

Citation Link,

SCV004708180

Molecular Genetics Laboratory, Biocruces Bizkaia Health Research Institute

no assertion criteria provided

Uncertain significance
(Mar 8, 2024)

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV001269996.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases did not allow this variant to be ruled in or out of causing disease. Therefore, this variant is classified as a variant of unknown significance.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Molecular Genetics Laboratory, Biocruces Bizkaia Health Research Institute, SCV004708180.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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