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NM_001134407.3(GRIN2A):c.2917G>A (p.Asp973Asn) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Jun 11, 2020
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001091969.24

Allele description [Variation Report for NM_001134407.3(GRIN2A):c.2917G>A (p.Asp973Asn)]

NM_001134407.3(GRIN2A):c.2917G>A (p.Asp973Asn)

Gene:
GRIN2A:glutamate ionotropic receptor NMDA type subunit 2A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p13.2
Genomic location:
Preferred name:
NM_001134407.3(GRIN2A):c.2917G>A (p.Asp973Asn)
HGVS:
  • NC_000016.10:g.9764627C>T
  • NG_011812.2:g.423128G>A
  • NM_000833.5:c.2917G>A
  • NM_001134407.3:c.2917G>AMANE SELECT
  • NM_001134408.2:c.2917G>A
  • NP_000824.1:p.Asp973Asn
  • NP_001127879.1:p.Asp973Asn
  • NP_001127880.1:p.Asp973Asn
  • NC_000016.9:g.9858484C>T
  • NG_011812.1:g.423128G>A
  • NM_000833.3:c.2917G>A
Protein change:
D973N
Links:
dbSNP: rs1900795341
NCBI 1000 Genomes Browser:
rs1900795341
Molecular consequence:
  • NM_000833.5:c.2917G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001134407.3:c.2917G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001134408.2:c.2917G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001248288CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)		Uncertain significance
(Jan 1, 2020) 		germlineclinical testing

Citation Link,

SCV001995125GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Uncertain significance
(Jun 11, 2020) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Details of each submission

From CeGaT Center for Human Genetics Tuebingen, SCV001248288.26

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

From GeneDx, SCV001995125.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed in large population cohorts (Lek et al., 2016); In silico analysis, which includes protein predictors and evolutionary conservation, supports that this variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024