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NM_000539.3(RHO):c.512C>A (p.Pro171Gln) AND not provided

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Jun 30, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001090663.26

Allele description [Variation Report for NM_000539.3(RHO):c.512C>A (p.Pro171Gln)]

NM_000539.3(RHO):c.512C>A (p.Pro171Gln)

Gene:
RHO:rhodopsin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q22.1
Genomic location:
Preferred name:
NM_000539.3(RHO):c.512C>A (p.Pro171Gln)
HGVS:
  • NC_000003.12:g.129531026C>A
  • NG_009115.1:g.7388C>A
  • NM_000539.3:c.512C>AMANE SELECT
  • NP_000530.1:p.Pro171Gln
  • NC_000003.11:g.129249869C>A
Protein change:
P171Q
Links:
dbSNP: rs2084776162
NCBI 1000 Genomes Browser:
rs2084776162
Molecular consequence:
  • NM_000539.3:c.512C>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001246336CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Pathogenic
(Feb 1, 2019)
germlineclinical testing

Citation Link,

SCV001580420Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Pathogenic
(Jun 30, 2023)
germlineclinical testing

PubMed (7)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlineyes2not providednot providednot providednot providedclinical testing

Citations

PubMed

Mutation spectrum of the rhodopsin gene among patients with autosomal dominant retinitis pigmentosa.

Dryja TP, Hahn LB, Cowley GS, McGee TL, Berson EL.

Proc Natl Acad Sci U S A. 1991 Oct 15;88(20):9370-4.

PubMed [citation]
PMID:
1833777
PMCID:
PMC52716

Rhodopsin mutations responsible for autosomal dominant retinitis pigmentosa. Clustering of functional classes along the polypeptide chain.

Sung CH, Davenport CM, Nathans J.

J Biol Chem. 1993 Dec 15;268(35):26645-9.

PubMed [citation]
PMID:
8253795
See all PubMed Citations (7)

Details of each submission

From CeGaT Center for Human Genetics Tuebingen, SCV001246336.25

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided2not providednot providednot provided

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001580420.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (7)

Description

Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt RHO protein function. For these reasons, this variant has been classified as Pathogenic. This variant disrupts the p.Pro171 amino acid residue in RHO. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 1833777, 8253795, 29847639). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Experimental studies have shown that this missense change affects RHO function (PMID: 30977563). ClinVar contains an entry for this variant (Variation ID: 866418). This missense change has been observed in individuals with autosomal dominant retinitis pigmentosa (PMID: 7987326, 11139241; Invitae). This variant is not present in population databases (gnomAD no frequency). This sequence change replaces proline, which is neutral and non-polar, with glutamine, which is neutral and polar, at codon 171 of the RHO protein (p.Pro171Gln).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024