NM_003072.5(SMARCA4):c.4171-13A>G AND not provided

Germline classification:: Likely benign (3 submissions)
Last evaluated:: Nov 8, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001090449.9

Allele description [Variation Report for NM_003072.5(SMARCA4):c.4171-13A>G]

NM_003072.5(SMARCA4):c.4171-13A>G

Gene:

SMARCA4:SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

19p13.2

Genomic location:

Preferred name:

NM_003072.5(SMARCA4):c.4171-13A>G

HGVS:

NC_000019.10:g.11041294A>G
NG_011556.3:g.85363A>G
NM_001128844.3:c.4171-13A>G
NM_001128845.2:c.4072-4A>G
NM_001128846.2:c.4072-4A>G
NM_001128847.4:c.4072-13A>G
NM_001128848.2:c.4072-13A>G
NM_001128849.3:c.4267-13A>G
NM_001374457.1:c.4072-13A>G
NM_001387283.1:c.4267-13A>G
NM_003072.5:c.4171-13A>GMANE SELECT
LRG_878t1:c.4171-13A>G
LRG_878:g.85363A>G
NC_000019.9:g.11151970A>G
NG_011556.2:g.85373A>G
NM_001128849.1:c.4267-13A>G

Links:

dbSNP: rs201298366

NCBI 1000 Genomes Browser:

rs201298366

Molecular consequence:

NM_001128844.3:c.4171-13A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001128845.2:c.4072-4A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001128846.2:c.4072-4A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001128847.4:c.4072-13A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001128848.2:c.4072-13A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001128849.3:c.4267-13A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001374457.1:c.4072-13A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001387283.1:c.4267-13A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_003072.5:c.4171-13A>G - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000730727	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (Nov 8, 2020)	germline	clinical testing	Citation Link,
SCV002035075	Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus	no assertion criteria provided	Likely benign	germline	clinical testing
SCV002035412	Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus See additional submitters Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	no assertion criteria provided	Likely benign	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000730727

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Likely benign
(Nov 8, 2020)

germline

clinical testing

Citation Link,

SCV002035075

Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus

no assertion criteria provided

Likely benign

germline

clinical testing

SCV002035412

Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided

Likely benign

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000730727.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV002035075.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus, SCV002035412.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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