NM_014140.4(SMARCAL1):c.962G>A (p.Gly321Asp) AND Schimke immuno-osseous dysplasia

Germline classification:
Likely benign (2 submissions)
Last evaluated:
Jan 19, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001080195.10

Allele description [Variation Report for NM_014140.4(SMARCAL1):c.962G>A (p.Gly321Asp)]

NM_014140.4(SMARCAL1):c.962G>A (p.Gly321Asp)

Gene:
SMARCAL1:SNF2 related chromatin remodeling annealing helicase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q35
Genomic location:
Preferred name:
NM_014140.4(SMARCAL1):c.962G>A (p.Gly321Asp)
HGVS:
  • NC_000002.12:g.216420398G>A
  • NG_009771.1:g.12985G>A
  • NM_001127207.2:c.962G>A
  • NM_014140.4:c.962G>AMANE SELECT
  • NP_001120679.1:p.Gly321Asp
  • NP_054859.2:p.Gly321Asp
  • NP_054859.2:p.Gly321Asp
  • LRG_108t1:c.962G>A
  • LRG_108:g.12985G>A
  • LRG_108p1:p.Gly321Asp
  • NC_000002.11:g.217285121G>A
  • NM_014140.3:c.962G>A
Protein change:
G321D
Links:
dbSNP: rs148752234
NCBI 1000 Genomes Browser:
rs148752234
Molecular consequence:
  • NM_001127207.2:c.962G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_014140.4:c.962G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Schimke immuno-osseous dysplasia (SIOD)
Synonyms:
Spondyloepiphyseal dysplasia nephrotic syndrome; Schimke immunoosseous dysplasia
Identifiers:
MONDO: MONDO:0009458; MedGen: C0877024; Orphanet: 1830; OMIM: 242900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001122634Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Likely benign
(Jan 19, 2024) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002076295Natera, Inc.
no assertion criteria provided
Benign
(Nov 11, 2019) 		germlineclinical testing

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001122634.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Natera, Inc., SCV002076295.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024