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NM_001034853.2(RPGR):c.3300_3301del (p.His1100fs) AND Retinal dystrophy

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jan 30, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001075605.2

Allele description [Variation Report for NM_001034853.2(RPGR):c.3300_3301del (p.His1100fs)]

NM_001034853.2(RPGR):c.3300_3301del (p.His1100fs)

Gene:
RPGR:retinitis pigmentosa GTPase regulator [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
Xp11.4
Genomic location:
Preferred name:
NM_001034853.2(RPGR):c.3300_3301del (p.His1100fs)
HGVS:
  • NC_000023.11:g.38285699_38285700del
  • NG_009553.1:g.46837_46838del
  • NM_000328.3:c.1905+1395_1905+1396del
  • NM_001034853.2:c.3300_3301delMANE SELECT
  • NM_001367245.1:c.1902+1395_1902+1396del
  • NM_001367246.1:c.1719+1395_1719+1396del
  • NM_001367247.1:c.1572+5260_1572+5261del
  • NM_001367248.1:c.1602+5260_1602+5261del
  • NM_001367249.1:c.1569+5260_1569+5261del
  • NM_001367250.1:c.1569+5260_1569+5261del
  • NM_001367251.1:c.1386+5260_1386+5261del
  • NP_001030025.1:p.His1100fs
  • NC_000023.10:g.38144952_38144953del
  • NM_001034853.1:c.3300_3301del
Protein change:
H1100fs
Links:
dbSNP: rs2067114709
NCBI 1000 Genomes Browser:
rs2067114709
Molecular consequence:
  • NM_001034853.2:c.3300_3301del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_000328.3:c.1905+1395_1905+1396del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367245.1:c.1902+1395_1902+1396del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367246.1:c.1719+1395_1719+1396del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367247.1:c.1572+5260_1572+5261del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367248.1:c.1602+5260_1602+5261del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367249.1:c.1569+5260_1569+5261del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367250.1:c.1569+5260_1569+5261del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367251.1:c.1386+5260_1386+5261del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Retinal dystrophy
Synonyms:
Inherited retinal dystrophy
Identifiers:
MONDO: MONDO:0019118; MeSH: D058499; MedGen: C0854723; Human Phenotype Ontology: HP:0000556

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001241232Blueprint Genetics
criteria provided, single submitter

(Blueprint Genetics Variant Classification Scheme)		Likely pathogenic
(Jan 30, 2019) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Blueprint Genetics, SCV001241232.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 23, 2024