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NM_000883.4(IMPDH1):c.967A>G (p.Lys323Glu) AND Retinal dystrophy

Germline classification:
Conflicting interpretations of pathogenicity (2 submissions)
Last evaluated:
Oct 1, 2023
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001074587.3

Allele description [Variation Report for NM_000883.4(IMPDH1):c.967A>G (p.Lys323Glu)]

NM_000883.4(IMPDH1):c.967A>G (p.Lys323Glu)

Gene:
IMPDH1:inosine monophosphate dehydrogenase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q32.1
Genomic location:
Preferred name:
NM_000883.4(IMPDH1):c.967A>G (p.Lys323Glu)
HGVS:
  • NC_000007.14:g.128398521T>C
  • NG_009194.1:g.16462A>G
  • NM_000883.4:c.967A>GMANE SELECT
  • NM_001102605.2:c.937A>G
  • NM_001142573.2:c.712A>G
  • NM_001142574.2:c.697A>G
  • NM_001142575.2:c.637A>G
  • NM_001142576.2:c.868A>G
  • NM_001304521.2:c.760A>G
  • NM_183243.3:c.859A>G
  • NP_000874.2:p.Lys323Glu
  • NP_001096075.1:p.Lys313Glu
  • NP_001136045.1:p.Lys238Glu
  • NP_001136046.1:p.Lys233Glu
  • NP_001136047.1:p.Lys213Glu
  • NP_001136048.1:p.Lys290Glu
  • NP_001291450.1:p.Lys254Glu
  • NP_899066.1:p.Lys287Glu
  • NC_000007.13:g.128038575T>C
  • NM_000883.3:c.967A>G
Protein change:
K213E
Links:
dbSNP: rs1562989913
NCBI 1000 Genomes Browser:
rs1562989913
Molecular consequence:
  • NM_000883.4:c.967A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001102605.2:c.937A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142573.2:c.712A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142574.2:c.697A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142575.2:c.637A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142576.2:c.868A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001304521.2:c.760A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_183243.3:c.859A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Retinal dystrophy
Synonyms:
Inherited retinal dystrophy
Identifiers:
MONDO: MONDO:0019118; MeSH: D058499; MedGen: C0854723; Human Phenotype Ontology: HP:0000556

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001240178Blueprint Genetics
criteria provided, single submitter

(Blueprint Genetics Variant Classification Scheme)
Likely pathogenic
(Jan 8, 2019)
germlineclinical testing

Citation Link,

SCV004704784Dept Of Ophthalmology, Nagoya University
criteria provided, single submitter

(Submitter's publication)
Uncertain significance
(Oct 1, 2023)
germlineresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing, research

Details of each submission

From Blueprint Genetics, SCV001240178.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Dept Of Ophthalmology, Nagoya University, SCV004704784.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024