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NM_000540.3(RYR1):c.14209C>T (p.Arg4737Trp) AND RYR1-related disorder

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 26, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001070022.6

Allele description [Variation Report for NM_000540.3(RYR1):c.14209C>T (p.Arg4737Trp)]

NM_000540.3(RYR1):c.14209C>T (p.Arg4737Trp)

Gene:
RYR1:ryanodine receptor 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.2
Genomic location:
Preferred name:
NM_000540.3(RYR1):c.14209C>T (p.Arg4737Trp)
HGVS:
  • NC_000019.10:g.38577954C>T
  • NG_008866.1:g.149255C>T
  • NM_000540.3:c.14209C>TMANE SELECT
  • NM_001042723.2:c.14194C>T
  • NP_000531.2:p.Arg4737Trp
  • NP_000531.2:p.Arg4737Trp
  • NP_001036188.1:p.Arg4732Trp
  • LRG_766t1:c.14209C>T
  • LRG_766:g.149255C>T
  • LRG_766p1:p.Arg4737Trp
  • NC_000019.9:g.39068594C>T
  • NM_000540.2(RYR1):c.14209C>T
  • NM_000540.2:c.14209C>T
  • P21817:p.Arg4737Trp
  • p.(Arg4737Trp)
Protein change:
R4732W
Links:
UniProtKB: P21817#VAR_045750; dbSNP: rs193922867
NCBI 1000 Genomes Browser:
rs193922867
Molecular consequence:
  • NM_000540.3:c.14209C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001042723.2:c.14194C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
RYR1-related disorder
Synonyms:
RYR1-Related Disorders; RYR1-related condition
Identifiers:
MedGen: CN239331

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001235229Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Pathogenic
(May 26, 2023)
germlineclinical testing

PubMed (8)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Identification of genetic mutations in Australian malignant hyperthermia families using sequencing of RYR1 hotspots.

Gillies RL, Bjorksten AR, Davis M, Du Sart D.

Anaesth Intensive Care. 2008 May;36(3):391-403.

PubMed [citation]
PMID:
18564801

Genetic variation in RYR1 and malignant hyperthermia phenotypes.

Carpenter D, Robinson RL, Quinnell RJ, Ringrose C, Hogg M, Casson F, Booms P, Iles DE, Halsall PJ, Steele DS, Shaw MA, Hopkins PM.

Br J Anaesth. 2009 Oct;103(4):538-48. doi: 10.1093/bja/aep204. Epub 2009 Jul 31.

PubMed [citation]
PMID:
19648156
See all PubMed Citations (8)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001235229.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (8)

Description

For these reasons, this variant has been classified as Pathogenic. This variant disrupts the p.Arg4737 amino acid residue in RYR1. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 16163667, 18564801, 19648156, 25960145). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Experimental studies have shown that this missense change affects RYR1 function (PMID: 27558158). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt RYR1 protein function. ClinVar contains an entry for this variant (Variation ID: 133060). This variant is also known as p.Arg4736Trp. This missense change has been observed in individual(s) with malignant hyperthermia (PMID: 12208234, 16163667, 26631338). It has also been observed to segregate with disease in related individuals. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces arginine, which is basic and polar, with tryptophan, which is neutral and slightly polar, at codon 4737 of the RYR1 protein (p.Arg4737Trp).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024