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NM_002382.5(MAX):c.376G>T (p.Ala126Ser) AND Hereditary pheochromocytoma-paraganglioma

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 24, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001044019.9

Allele description [Variation Report for NM_002382.5(MAX):c.376G>T (p.Ala126Ser)]

NM_002382.5(MAX):c.376G>T (p.Ala126Ser)

Gene:
MAX:MYC associated factor X [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q23.3
Genomic location:
Preferred name:
NM_002382.5(MAX):c.376G>T (p.Ala126Ser)
HGVS:
  • NC_000014.9:g.65076583C>A
  • NG_029830.1:g.30927G>T
  • NM_001271069.2:c.144+17125G>T
  • NM_001320415.2:c.187G>T
  • NM_001407094.1:c.376G>T
  • NM_001407095.1:c.349G>T
  • NM_001407096.1:c.*149G>T
  • NM_001407097.1:c.*165G>T
  • NM_001407098.1:c.268G>T
  • NM_001407099.1:c.*149G>T
  • NM_001407100.1:c.*165G>T
  • NM_001407101.1:c.*165G>T
  • NM_001407102.1:c.*149G>T
  • NM_001407103.1:c.*165G>T
  • NM_001407104.1:c.*149G>T
  • NM_001407105.1:c.187G>T
  • NM_001407106.1:c.187G>T
  • NM_001407107.1:c.187G>T
  • NM_001407108.1:c.*149G>T
  • NM_001407109.1:c.*165G>T
  • NM_001407110.1:c.*165G>T
  • NM_001407111.1:c.175G>T
  • NM_001407112.1:c.175G>T
  • NM_002382.5:c.376G>TMANE SELECT
  • NM_145112.3:c.349G>T
  • NM_145113.3:c.*165G>T
  • NM_197957.4:c.171+17125G>T
  • NP_001307344.1:p.Ala63Ser
  • NP_001394023.1:p.Ala126Ser
  • NP_001394024.1:p.Ala117Ser
  • NP_001394027.1:p.Ala90Ser
  • NP_001394034.1:p.Ala63Ser
  • NP_001394035.1:p.Ala63Ser
  • NP_001394036.1:p.Ala63Ser
  • NP_001394040.1:p.Ala59Ser
  • NP_001394041.1:p.Ala59Ser
  • NP_002373.3:p.Ala126Ser
  • NP_002373.3:p.Ala126Ser
  • NP_660087.1:p.Ala117Ser
  • LRG_530t1:c.376G>T
  • LRG_530:g.30927G>T
  • LRG_530p1:p.Ala126Ser
  • NC_000014.8:g.65543301C>A
  • NM_002382.3:c.376G>T
  • NM_002382.4:c.376G>T
  • NR_073137.1:n.500G>T
  • NR_073137.2:n.500G>T
  • NR_176275.1:n.619G>T
  • NR_176278.1:n.349G>T
  • NR_176279.1:n.553G>T
  • NR_176280.1:n.518G>T
  • NR_176281.1:n.700G>T
  • NR_176282.1:n.423G>T
Protein change:
A117S
Links:
dbSNP: rs779789251
NCBI 1000 Genomes Browser:
rs779789251
Molecular consequence:
  • NM_145113.3:c.*165G>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001271069.2:c.144+17125G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_197957.4:c.171+17125G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001320415.2:c.187G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407094.1:c.376G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407095.1:c.349G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407098.1:c.268G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407105.1:c.187G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407106.1:c.187G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407107.1:c.187G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407111.1:c.175G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407112.1:c.175G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002382.5:c.376G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_145112.3:c.349G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary pheochromocytoma-paraganglioma
Synonyms:
Hereditary Paraganglioma-Pheochromocytoma Syndromes; Hereditary Paragangliomas and Pheochromocytomas
Identifiers:
MONDO: MONDO:0017366; MedGen: C1708353

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001207792Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Uncertain significance
(Apr 24, 2019) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001207792.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The serine amino acid residue is found in multiple mammalian species, suggesting that this missense change does not adversely affect protein function. These predictions have not been confirmed by published functional studies and their clinical significance is uncertain. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant has not been reported in the literature in individuals with MAX-related conditions. This variant is not present in population databases (ExAC no frequency). This sequence change replaces alanine with serine at codon 126 of the MAX protein (p.Ala126Ser). The alanine residue is moderately conserved and there is a moderate physicochemical difference between alanine and serine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024