NM_000260.4(MYO7A):c.2019del (p.Ile674fs) AND not provided

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Feb 24, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001041730.6

Allele description [Variation Report for NM_000260.4(MYO7A):c.2019del (p.Ile674fs)]

NM_000260.4(MYO7A):c.2019del (p.Ile674fs)

Gene:

MYO7A:myosin VIIA [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

11q13.5

Genomic location:

Preferred name:

NM_000260.4(MYO7A):c.2019del (p.Ile674fs)

HGVS:

NC_000011.10:g.77174839del
NG_009086.2:g.51594del
NM_000260.4:c.2019delMANE SELECT
NM_001127180.2:c.2019del
NM_001369365.1:c.1986del
NP_000251.3:p.Ile674fs
NP_001120652.1:p.Ile674fs
NP_001356294.1:p.Ile663fs
LRG_1420t1:c.2019del
LRG_1420:g.51594del
LRG_1420p1:p.Ile674fs
NC_000011.9:g.76885882del
NC_000011.9:g.76885885del
NG_009086.1:g.51576del
NM_000260.3:c.2019del

Protein change:

I663fs

Links:

dbSNP: rs1261771810

NCBI 1000 Genomes Browser:

rs1261771810

Molecular consequence:

NM_000260.4:c.2019del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001127180.2:c.2019del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001369365.1:c.1986del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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gp50 [Antheraea pernyi nucleopolyhedrovirus]
gp50 [Antheraea pernyi nucleopolyhedrovirus]
gi|94983384|gb|ABF50324.1|

Protein
HTR12 Histone superfamily protein [Arabidopsis thaliana]
HTR12 Histone superfamily protein [Arabidopsis thaliana]
Gene ID:839104

Gene
839104[uid] AND (alive[prop]) (1)
Gene
PPRCHA0_RS10955 [Pseudomonas protegens CHA0]
PPRCHA0_RS10955 [Pseudomonas protegens CHA0]
Gene ID:57475131

Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001205362	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Pathogenic (Feb 24, 2022)	germline	clinical testing	PubMed (3) [See all records that cite these PMIDs] 8900236, 25404053, 28492532

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001205362

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Pathogenic
(Feb 24, 2022)

germline

clinical testing

PubMed (3)
[See all records that cite these PMIDs]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Myosin VIIA mutation screening in 189 Usher syndrome type 1 patients.

Weston MD, Kelley PM, Overbeck LD, Wagenaar M, Orten DJ, Hasson T, Chen ZY, Corey D, Mooseker M, Sumegi J, Cremers C, Moller C, Jacobson SG, Gorin MB, Kimberling WJ.

Am J Hum Genet. 1996 Nov;59(5):1074-83.

PubMed [citation]

PMID:: 8900236
PMCID:: PMC1914835

Targeted next generation sequencing for molecular diagnosis of Usher syndrome.

Aparisi MJ, Aller E, Fuster-García C, García-García G, Rodrigo R, Vázquez-Manrique RP, Blanco-Kelly F, Ayuso C, Roux AF, Jaijo T, Millán JM.

Orphanet J Rare Dis. 2014 Nov 18;9:168. doi: 10.1186/s13023-014-0168-7.

PubMed [citation]

PMID:: 25404053
PMCID:: PMC4245769

See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001205362.5

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (3)

Description

ClinVar contains an entry for this variant (Variation ID: 839872). This variant has not been reported in the literature in individuals affected with MYO7A-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change creates a premature translational stop signal (p.Ile674Serfs*6) in the MYO7A gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in MYO7A are known to be pathogenic (PMID: 8900236, 25404053). For these reasons, this variant has been classified as Pathogenic.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

ClinVar

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