NM_000179.3(MSH6):c.57T>A (p.Asp19Glu) AND Hereditary cancer-predisposing syndrome

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 13, 2018
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001024550.3

Allele description [Variation Report for NM_000179.3(MSH6):c.57T>A (p.Asp19Glu)]

NM_000179.3(MSH6):c.57T>A (p.Asp19Glu)

Gene:

MSH6:mutS homolog 6 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p16.3

Genomic location:

Preferred name:

NM_000179.3(MSH6):c.57T>A (p.Asp19Glu)

HGVS:

NC_000002.12:g.47783290T>A
NG_007111.1:g.5144T>A
NM_000179.3:c.57T>AMANE SELECT
NM_001281492.2:c.57T>A
NM_001281493.2:c.-680T>A
NP_000170.1:p.Asp19Glu
NP_001268421.1:p.Asp19Glu
LRG_219t1:c.57T>A
LRG_219:g.5144T>A
NC_000002.11:g.48010429T>A
NC_000002.11:g.48010429T>A
NM_000179.2:c.57T>A

Protein change:

D19E

Links:

dbSNP: rs752794296

NCBI 1000 Genomes Browser:

rs752794296

Molecular consequence:

NM_001281493.2:c.-680T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_000179.3:c.57T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001281492.2:c.57T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Hereditary cancer-predisposing syndrome
Synonyms:: Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001186582	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Mar 13, 2018)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001186582

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Mar 13, 2018)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV001186582.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.D19E variant (also known as c.57T>A), located in coding exon 1 of the MSH6 gene, results from a T to A substitution at nucleotide position 57. The aspartic acid at codon 19 is replaced by glutamic acid, an amino acid with highly similar properties. This amino acid position is poorly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. In addition, the CoDP in silico tool predicts this alteration will have minor impact on molecular function, with a score of 0.000 (Terui H et al. J. Biomed. Sci. 2013 Apr;20:25). Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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