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NM_000264.5(PTCH1):c.3347T>A (p.Val1116Glu) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 30, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001020051.4

Allele description [Variation Report for NM_000264.5(PTCH1):c.3347T>A (p.Val1116Glu)]

NM_000264.5(PTCH1):c.3347T>A (p.Val1116Glu)

Gene:
PTCH1:patched 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q22.32
Genomic location:
Preferred name:
NM_000264.5(PTCH1):c.3347T>A (p.Val1116Glu)
HGVS:
  • NC_000009.12:g.95453580A>T
  • NG_007664.1:g.68386T>A
  • NM_000264.5:c.3347T>AMANE SELECT
  • NM_001083602.3:c.3149T>A
  • NM_001083603.3:c.3344T>A
  • NM_001083604.3:c.2894T>A
  • NM_001083605.3:c.2894T>A
  • NM_001083606.3:c.2894T>A
  • NM_001083607.3:c.2894T>A
  • NM_001354918.2:c.3191T>A
  • NP_000255.2:p.Val1116Glu
  • NP_001077071.1:p.Val1050Glu
  • NP_001077072.1:p.Val1115Glu
  • NP_001077073.1:p.Val965Glu
  • NP_001077074.1:p.Val965Glu
  • NP_001077075.1:p.Val965Glu
  • NP_001077076.1:p.Val965Glu
  • NP_001341847.1:p.Val1064Glu
  • LRG_515t1:c.3347T>A
  • LRG_515:g.68386T>A
  • NC_000009.11:g.98215862A>T
  • NM_000264.3:c.3347T>A
  • NR_149061.2:n.4086T>A
Protein change:
V1050E
Links:
dbSNP: rs863224653
NCBI 1000 Genomes Browser:
rs863224653
Molecular consequence:
  • NM_000264.5:c.3347T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001083602.3:c.3149T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001083603.3:c.3344T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001083604.3:c.2894T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001083605.3:c.2894T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001083606.3:c.2894T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001083607.3:c.2894T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354918.2:c.3191T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_149061.2:n.4086T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001181477Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Apr 30, 2024) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV001181477.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.V1116E variant (also known as c.3347T>A), located in coding exon 20 of the PTCH1 gene, results from a T to A substitution at nucleotide position 3347. The valine at codon 1116 is replaced by glutamic acid, an amino acid with dissimilar properties. This amino acid position is not well conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024