NM_000245.4(MET):c.2960G>C (p.Arg987Pro) AND Hereditary cancer-predisposing syndrome

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Apr 16, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001018063.4

Allele description [Variation Report for NM_000245.4(MET):c.2960G>C (p.Arg987Pro)]

NM_000245.4(MET):c.2960G>C (p.Arg987Pro)

Gene:

MET:MET proto-oncogene, receptor tyrosine kinase [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

7q31.2

Genomic location:

Preferred name:

NM_000245.4(MET):c.2960G>C (p.Arg987Pro)

HGVS:

NC_000007.14:g.116771921G>C
NG_008996.1:g.104517G>C
NM_000245.4:c.2960G>CMANE SELECT
NM_001127500.3:c.3014G>C
NM_001324402.2:c.1670G>C
NP_000236.2:p.Arg987Pro
NP_001120972.1:p.Arg1005Pro
NP_001311331.1:p.Arg557Pro
LRG_662t1:c.3014G>C
LRG_662:g.104517G>C
NC_000007.13:g.116411975G>C
NM_001127500.1:c.3014G>C

Protein change:

R1005P

Links:

dbSNP: rs910937816

NCBI 1000 Genomes Browser:

rs910937816

Molecular consequence:

NM_000245.4:c.2960G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001127500.3:c.3014G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001324402.2:c.1670G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Hereditary cancer-predisposing syndrome
Synonyms:: Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001179243	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Apr 16, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001179243

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Apr 16, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV001179243.5

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.R1005P variant (also known as c.3014G>C), located in coding exon 13 of the MET gene, results from a G to C substitution at nucleotide position 3014. The arginine at codon 1005 is replaced by proline, an amino acid with dissimilar properties. This amino acid position is highly conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 11, 2024

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