NM_000492.4(CFTR):c.1209+2T>G AND Cystic fibrosis

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Jan 29, 2018
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001009435.1

Allele description [Variation Report for NM_000492.4(CFTR):c.1209+2T>G]

NM_000492.4(CFTR):c.1209+2T>G

Gene:

CFTR:CF transmembrane conductance regulator [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

7q31.2

Genomic location:

Preferred name:

NM_000492.4(CFTR):c.1209+2T>G

HGVS:

NC_000007.14:g.117542110T>G
NG_016465.4:g.81327T>G
NM_000492.4:c.1209+2T>GMANE SELECT
LRG_663t1:c.1209+2T>G
LRG_663:g.81327T>G
NC_000007.13:g.117182164T>G
NM_000492.3:c.1209+2T>G

Links:

dbSNP: rs1584790302

NCBI 1000 Genomes Browser:

rs1584790302

Molecular consequence:

NM_000492.4:c.1209+2T>G - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:: Cystic fibrosis (CF)
Synonyms:: Mucoviscidosis
Identifiers:: MONDO: MONDO:0009061; MedGen: C0010674; Orphanet: 586; OMIM: 219700

Recent activity

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Homo sapiens myeloid leukemia factor 1 (MLF1), transcript variant 3, mRNA
Homo sapiens myeloid leukemia factor 1 (MLF1), transcript variant 3, mRNA
gi|1677483996|ref|NM_001130156.3|

Nucleotide
ENSPSIG00000005438 AND (alive[prop]) (0)
Gene
PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D [Homo sapiens]
PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D [Homo sapiens]
Gene ID:8493

Gene
8493[uid] AND (alive[prop]) (1)
Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001169447	CFTR-France	criteria provided, single submitter (Claustres M et al. (Hum Mutat 2017))	Pathogenic (Jan 29, 2018)	germline	curation	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001169447

CFTR-France

criteria provided, single submitter

(Claustres M et al. (Hum Mutat 2017))

Pathogenic
(Jan 29, 2018)

germline

curation

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	curation

Citations

PubMed

CFTR-France, a national relational patient database for sharing genetic and phenotypic data associated with rare CFTR variants.

Claustres M, Thèze C, des Georges M, Baux D, Girodon E, Bienvenu T, Audrezet MP, Dugueperoux I, Férec C, Lalau G, Pagin A, Kitzis A, Thoreau V, Gaston V, Bieth E, Malinge MC, Reboul MP, Fergelot P, Lemonnier L, Mekki C, Fanen P, Bergougnoux A, et al.

Hum Mutat. 2017 Oct;38(10):1297-1315. doi: 10.1002/humu.23276. Epub 2017 Jun 28.

PubMed [citation]

PMID:: 28603918

Details of each submission

From CFTR-France, SCV001169447.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	curation	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jun 10, 2023

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