U.S. flag

An official website of the United States government

NM_001458.5(FLNC):c.1965_1966del (p.Ala656fs) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Aug 9, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001008981.1

Allele description [Variation Report for NM_001458.5(FLNC):c.1965_1966del (p.Ala656fs)]

NM_001458.5(FLNC):c.1965_1966del (p.Ala656fs)

Gene:
FLNC:filamin C [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
7q32.1
Genomic location:
Preferred name:
NM_001458.5(FLNC):c.1965_1966del (p.Ala656fs)
HGVS:
  • NC_000007.14:g.128841321_128841322del
  • NG_011807.1:g.15893_15894del
  • NM_001127487.2:c.1965_1966del
  • NM_001458.5:c.1965_1966delMANE SELECT
  • NP_001120959.1:p.Ala656fs
  • NP_001449.3:p.Ala656fs
  • LRG_870:g.15893_15894del
  • NC_000007.13:g.128481375_128481376del
  • NM_001458.4:c.1965_1966delTG
Protein change:
A656fs
Links:
dbSNP: rs1585156450
NCBI 1000 Genomes Browser:
rs1585156450
Molecular consequence:
  • NM_001127487.2:c.1965_1966del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001458.5:c.1965_1966del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001168789GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(Aug 9, 2018)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV001168789.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Although the c.1965_1966delTG likely pathogenic variant in the FLNC gene has not been reported to our knowledge, this variant causes a shift in reading frame starting at codon alanine 656, changing it to a proline, and creating a premature stop codon at position 8 of the new reading frame, denoted p.Ala656ProfsX8. This likely pathogenic variant is expected to result in either an abnormal, truncated protein product or loss of protein from this allele through nonsense-mediated mRNA decay. Other downstream frameshift variants in the FLNC gene have been reported in Human Gene Mutation Database in association with cardiomyopathy (Stenson et al., 2014), indicating that loss of function is a mechanism of disease for this gene. Furthermore, the c.1965_1966delTG variant has not been observed in large population cohorts (Lek et al., 2016).In summary, c.1965_1966delTG in the FLNC gene is interpreted as a likely pathogenic variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024