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GRCh37/hg19 20p12.3-11.22(chr20:8571696-22088650)x1 AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 21, 2018
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001007080.1

Allele description [Variation Report for GRCh37/hg19 20p12.3-11.22(chr20:8571696-22088650)x1]

GRCh37/hg19 20p12.3-11.22(chr20:8571696-22088650)x1

Genes:
  • XRN2:5'-3' exoribonuclease 2 [Gene - OMIM - HGNC]
  • BANF2:BANF family member 2 [Gene - HGNC]
  • BTBD3:BTB domain containing 3 [Gene - OMIM - HGNC]
  • DTD1:D-aminoacyl-tRNA deacylase 1 [Gene - OMIM - HGNC]
  • ESF1:ESF1 nucleolar pre-rRNA processing protein homolog [Gene - OMIM - HGNC]
  • INSM1:INSM transcriptional repressor 1 [Gene - OMIM - HGNC]
  • MKKS:MKKS centrosomal shuttling protein [Gene - OMIM - HGNC]
  • NAA20:N-alpha-acetyltransferase 20, NatB catalytic subunit [Gene - OMIM - HGNC]
  • NDUFAF5:NADH:ubiquinone oxidoreductase complex assembly factor 5 [Gene - OMIM - HGNC]
  • NKX2-2:NK2 homeobox 2 [Gene - OMIM - HGNC]
  • NKX2-4:NK2 homeobox 4 [Gene - OMIM - HGNC]
  • PET117:PET117 cytochrome c oxidase chaperone [Gene - OMIM - HGNC]
  • RBBP9:RB binding protein 9, serine hydrolase [Gene - OMIM - HGNC]
  • POLR3F:RNA polymerase III subunit F [Gene - OMIM - HGNC]
  • RALGAPA2:Ral GTPase activating protein catalytic subunit alpha 2 [Gene - OMIM - HGNC]
  • RIN2:Ras and Rab interactor 2 [Gene - OMIM - HGNC]
  • SCP2D1:SCP2 sterol binding domain containing 1 [Gene - HGNC]
  • SCP2D1-AS1:SCP2D1 antisense RNA 1 [Gene - HGNC]
  • SEC23B:SEC23 homolog B, COPII coat complex component [Gene - OMIM - HGNC]
  • SEL1L2:SEL1L2 adaptor subunit of SYVN1 ubiquitin ligase [Gene - OMIM - HGNC]
  • SLX4IP:SLX4 interacting protein [Gene - OMIM - HGNC]
  • ANKEF1:ankyrin repeat and EF-hand domain containing 1 [Gene - HGNC]
  • BFSP1:beaded filament structural protein 1 [Gene - OMIM - HGNC]
  • CFAP61:cilia and flagella associated protein 61 [Gene - OMIM - HGNC]
  • CRNKL1:crooked neck pre-mRNA splicing factor 1 [Gene - OMIM - HGNC]
  • DSTN:destrin, actin depolymerizing factor [Gene - OMIM - HGNC]
  • DZANK1:double zinc ribbon and ankyrin repeat domains 1 [Gene - OMIM - HGNC]
  • FLRT3:fibronectin leucine rich transmembrane protein 3 [Gene - OMIM - HGNC]
  • ISM1:isthmin 1 [Gene - OMIM - HGNC]
  • JAG1:jagged canonical Notch ligand 1 [Gene - OMIM - HGNC]
  • KIF16B:kinesin family member 16B [Gene - OMIM - HGNC]
  • KIZ:kizuna centrosomal protein [Gene - OMIM - HGNC]
  • KAT14:lysine acetyltransferase 14 [Gene - OMIM - HGNC]
  • LAMP5:lysosomal associated membrane protein family member 5 [Gene - OMIM - HGNC]
  • MGME1:mitochondrial genome maintenance exonuclease 1 [Gene - OMIM - HGNC]
  • MACROD2:mono-ADP ribosylhydrolase 2 [Gene - OMIM - HGNC]
  • OTOR:otoraplin [Gene - OMIM - HGNC]
  • OVOL2:ovo like zinc finger 2 [Gene - OMIM - HGNC]
  • PAK5:p21 (RAC1) activated kinase 5 [Gene - OMIM - HGNC]
  • PAX1:paired box 1 [Gene - OMIM - HGNC]
  • PLCB1:phospholipase C beta 1 [Gene - OMIM - HGNC]
  • PLCB4:phospholipase C beta 4 [Gene - OMIM - HGNC]
  • PCSK2:proprotein convertase subtilisin/kexin type 2 [Gene - OMIM - HGNC]
  • RRBP1:ribosome binding protein 1 [Gene - OMIM - HGNC]
  • SPTLC3:serine palmitoyltransferase long chain base subunit 3 [Gene - OMIM - HGNC]
  • SNRPB2:small nuclear ribonucleoprotein polypeptide B2 [Gene - OMIM - HGNC]
  • SLC24A3:solute carrier family 24 member 3 [Gene - OMIM - HGNC]
  • SNX5:sorting nexin 5 [Gene - OMIM - HGNC]
  • SNAP25:synaptosome associated protein 25 [Gene - OMIM - HGNC]
  • TASP1:taspase 1 [Gene - OMIM - HGNC]
  • ZNF133:zinc finger protein 133 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
20p12.3-11.22
Genomic location:
Chr20: 8571696 - 22088650 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 20p12.3-11.22(chr20:8571696-22088650)x1
HGVS:
NC_000020.10:g.(?_8571696)_(22088650_?)del

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001166647Quest Diagnostics Nichols Institute San Juan Capistrano
no assertion criteria provided
Pathogenic
(Aug 21, 2018)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV001166647.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 1, 2024