NC_000002.12:g.202373247_202381017del AND Pulmonary arterial hypertension

Germline classification:: Pathogenic (1 submission)
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001003873.1

Allele description [Variation Report for NC_000002.12:g.202373247_202381017del]

NC_000002.12:g.202373247_202381017del

Genes:

LOC129935429:ATAC-STARR-seq lymphoblastoid active region 16999 [Gene]
LOC129935430:ATAC-STARR-seq lymphoblastoid active region 17000 [Gene]
LOC129935435:ATAC-STARR-seq lymphoblastoid active region 17001 [Gene]
LOC129935431:ATAC-STARR-seq lymphoblastoid silent region 12241 [Gene]
LOC129935432:ATAC-STARR-seq lymphoblastoid silent region 12242 [Gene]
LOC129935433:ATAC-STARR-seq lymphoblastoid silent region 12243 [Gene]
LOC129935434:ATAC-STARR-seq lymphoblastoid silent region 12244 [Gene]
BMPR2:bone morphogenetic protein receptor type 2 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

2q33.1

Genomic location:

Preferred name:

NC_000002.12:g.202373247_202381017del

HGVS:

NC_000002.12:g.202373247_202381017del
NG_009363.1:g.1921_9691del
LRG_712:g.1921_9691del
NC_000002.11:g.203237970_203245740del

Condition(s)

Name:: Pulmonary arterial hypertension
Identifiers:: MONDO: MONDO:0015924; MeSH: D000081029; MedGen: C2973725; Orphanet: 182090; Human Phenotype Ontology: HP:0002092

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001162334	NIHR Bioresource Rare Diseases, University of Cambridge	no assertion criteria provided	Pathogenic	unknown	research	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001162334

NIHR Bioresource Rare Diseases, University of Cambridge

no assertion criteria provided

Pathogenic

unknown

research

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	yes	1	not provided	not provided	1	not provided	research

Citations

PubMed

Whole-genome sequencing of patients with rare diseases in a national health system.

Turro E, Astle WJ, Megy K, Gräf S, Greene D, Shamardina O, Allen HL, Sanchis-Juan A, Frontini M, Thys C, Stephens J, Mapeta R, Burren OS, Downes K, Haimel M, Tuna S, Deevi SVV, Aitman TJ, Bennett DL, Calleja P, Carss K, Caulfield MJ, et al.

Nature. 2020 Jul;583(7814):96-102. doi: 10.1038/s41586-020-2434-2. Epub 2020 Jun 24.

PubMed [citation]

PMID:: 32581362
PMCID:: PMC7610553

Details of each submission

From NIHR Bioresource Rare Diseases, University of Cambridge, SCV001162334.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	research	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	1	not provided	not provided		1	not provided	not provided	not provided

Last Updated: Oct 14, 2023

ClinVar

Relating variation to medicine