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NM_130849.4(SLC39A4):c.1004_1020dup (p.Ala341fs) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 1, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000999108.22

Allele description [Variation Report for NM_130849.4(SLC39A4):c.1004_1020dup (p.Ala341fs)]

NM_130849.4(SLC39A4):c.1004_1020dup (p.Ala341fs)

Gene:
SLC39A4:solute carrier family 39 member 4 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
8q24.3
Genomic location:
Preferred name:
NM_130849.4(SLC39A4):c.1004_1020dup (p.Ala341fs)
HGVS:
  • NC_000008.11:g.144414393_144414409dup
  • NG_012234.2:g.7484_7500dup
  • NM_001374839.1:c.722_738dup
  • NM_017767.3:c.929_945dup
  • NM_130849.4:c.1004_1020dupMANE SELECT
  • NP_001361768.1:p.Ala247fs
  • NP_060237.3:p.Ala316fs
  • NP_570901.3:p.Ala341fs
  • NC_000008.10:g.145639777_145639793dup
Protein change:
A247fs
Links:
dbSNP: rs1586652047
NCBI 1000 Genomes Browser:
rs1586652047
Molecular consequence:
  • NM_001374839.1:c.722_738dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_017767.3:c.929_945dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_130849.4:c.1004_1020dup - frameshift variant - [Sequence Ontology: SO:0001589]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001155560CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)		Likely pathogenic
(Jun 1, 2019) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Details of each submission

From CeGaT Center for Human Genetics Tuebingen, SCV001155560.27

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Oct 20, 2024