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NM_002834.5(PTPN11):c.214G>A (p.Ala72Thr) AND Noonan syndrome 1

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 27, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000995620.6

Allele description [Variation Report for NM_002834.5(PTPN11):c.214G>A (p.Ala72Thr)]

NM_002834.5(PTPN11):c.214G>A (p.Ala72Thr)

Gene:
PTPN11:protein tyrosine phosphatase non-receptor type 11 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q24.13
Genomic location:
Preferred name:
NM_002834.5(PTPN11):c.214G>A (p.Ala72Thr)
HGVS:
  • NC_000012.12:g.112450394G>A
  • NG_007459.1:g.36663G>A
  • NM_001330437.2:c.214G>A
  • NM_001374625.1:c.211G>A
  • NM_002834.5:c.214G>AMANE SELECT
  • NM_080601.3:c.214G>A
  • NP_001317366.1:p.Ala72Thr
  • NP_001361554.1:p.Ala71Thr
  • NP_002825.3:p.Ala72Thr
  • NP_542168.1:p.Ala72Thr
  • LRG_614t1:c.214G>A
  • LRG_614:g.36663G>A
  • NC_000012.11:g.112888198G>A
  • NM_002834.3:c.214G>A
  • Q06124:p.Ala72Thr
Protein change:
A71T
Links:
UniProtKB: Q06124#VAR_015996; dbSNP: rs121918453
NCBI 1000 Genomes Browser:
rs121918453
Molecular consequence:
  • NM_001330437.2:c.214G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374625.1:c.211G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002834.5:c.214G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080601.3:c.214G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Noonan syndrome 1 (NS1)
Synonyms:
Turner Syndrome, Male; Turner phenotype with normal karyotype; Female pseudo-Turner syndrome
Identifiers:
MONDO: MONDO:0008104; MedGen: C4551602; Orphanet: 648; OMIM: 163950

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001149899Institute of Human Genetics Munich, Klinikum Rechts Der Isar, TU München
criteria provided, single submitter

(Classification criteria August 2017)
Pathogenic
(Mar 27, 2018)
de novoclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyes1not providednot provided1not providedclinical testing

Details of each submission

From Institute of Human Genetics Munich, Klinikum Rechts Der Isar, TU München, SCV001149899.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyes1bloodnot provided1not providednot providednot provided

Last Updated: Sep 16, 2024