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NM_000162.5(GCK):c.848del (p.Asn283fs) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Apr 11, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000992066.2

Allele description [Variation Report for NM_000162.5(GCK):c.848del (p.Asn283fs)]

NM_000162.5(GCK):c.848del (p.Asn283fs)

Gene:
GCK:glucokinase [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
7p13
Genomic location:
Preferred name:
NM_000162.5(GCK):c.848del (p.Asn283fs)
HGVS:
  • NC_000007.14:g.44147667del
  • NG_008847.2:g.55506del
  • NM_000162.5:c.848delMANE SELECT
  • NM_001354800.1:c.848del
  • NM_033507.3:c.851del
  • NM_033508.3:c.845del
  • NP_000153.1:p.Asn283fs
  • NP_001341729.1:p.Asn283fs
  • NP_277042.1:p.Asn284fs
  • NP_277043.1:p.Asn282fs
  • LRG_1074t1:c.848del
  • LRG_1074t2:c.851del
  • LRG_1074:g.55506del
  • LRG_1074p1:p.Asn283fs
  • LRG_1074p2:p.Asn284fs
  • NC_000007.13:g.44187266del
  • NM_000162.3:c.848del
Protein change:
N282fs
Links:
dbSNP: rs1583596119
NCBI 1000 Genomes Browser:
rs1583596119
Molecular consequence:
  • NM_000162.5:c.848del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001354800.1:c.848del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_033507.3:c.851del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_033508.3:c.845del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001144038Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)		Likely pathogenic
(Apr 11, 2019) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Athena Diagnostics, SCV001144038.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

The variant results in a shift of the reading frame, and is therefore predicted to result in the loss of a functional protein. Not found in the total gnomAD dataset, and the data is high quality (0/278978 chr).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024