NM_004100.5(EYA4):c.1434G>T (p.Met478Ile) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Apr 11, 2019
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000991976.4

Allele description [Variation Report for NM_004100.5(EYA4):c.1434G>T (p.Met478Ile)]

NM_004100.5(EYA4):c.1434G>T (p.Met478Ile)

Genes:
EYA4:EYA transcriptional coactivator and phosphatase 4 [Gene - OMIM - HGNC]
TARID:TCF21 antisense RNA inducing promoter demethylation [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6q23.2
Genomic location:
Preferred name:
NM_004100.5(EYA4):c.1434G>T (p.Met478Ile)
HGVS:
  • NC_000006.12:g.133512971G>T
  • NG_011596.2:g.276615G>T
  • NM_001301012.2:c.1272G>T
  • NM_001301013.2:c.1452G>T
  • NM_001370458.1:c.1365G>T
  • NM_001370459.1:c.1290G>T
  • NM_004100.5:c.1434G>TMANE SELECT
  • NM_172103.4:c.1365G>T
  • NM_172105.4:c.1434G>T
  • NP_001287941.1:p.Met424Ile
  • NP_001287942.1:p.Met484Ile
  • NP_001357387.1:p.Met455Ile
  • NP_001357388.1:p.Met430Ile
  • NP_004091.3:p.Met478Ile
  • NP_742101.2:p.Met455Ile
  • NP_742103.1:p.Met478Ile
  • LRG_418t1:c.1434G>T
  • LRG_418:g.276615G>T
  • LRG_418p1:p.Met478Ile
  • NC_000006.11:g.133834109G>T
  • NM_004100.4:c.1434G>T
Protein change:
M424I
Links:
dbSNP: rs1187396214
NCBI 1000 Genomes Browser:
rs1187396214
Molecular consequence:
  • NM_001301012.2:c.1272G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001301013.2:c.1452G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370458.1:c.1365G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370459.1:c.1290G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004100.5:c.1434G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172103.4:c.1365G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172105.4:c.1434G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001143891Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)
Uncertain significance
(Nov 16, 2018)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002005250GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Apr 11, 2019)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Athena Diagnostics, SCV001143891.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV002005250.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed in large population cohorts (Lek et al., 2016); In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; Has not been previously published as pathogenic or benign to our knowledge

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024