NM_152515.5(CKAP2L):c.552_555del (p.Asn184fs) AND Filippi syndrome

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Jun 20, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000991366.1

Allele description [Variation Report for NM_152515.5(CKAP2L):c.552_555del (p.Asn184fs)]

NM_152515.5(CKAP2L):c.552_555del (p.Asn184fs)

Gene:

CKAP2L:cytoskeleton associated protein 2 like [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

2q14.1

Genomic location:

Preferred name:

NM_152515.5(CKAP2L):c.552_555del (p.Asn184fs)

HGVS:

NC_000002.12:g.112756819GTTT[1]
NC_000002.12:g.112756819_112756822GTTT[1]
NG_041820.1:g.12855CAAA[1]
NM_001304361.2:c.57_60del
NM_152515.5:c.552_555delMANE SELECT
NP_001291290.1:p.Asn19fs
NP_689728.3:p.Asn184fs
NC_000002.11:g.113514396GTTT[1]

Protein change:

N184fs

Links:

dbSNP: rs778989224

NCBI 1000 Genomes Browser:

rs778989224

Molecular consequence:

NM_001304361.2:c.57_60del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_152515.5:c.552_555del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:: Filippi syndrome (FLPIS)
Identifiers:: MONDO: MONDO:0010092; MedGen: C0795940; Orphanet: 3255; OMIM: 272440

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001142759	Hadassah Hebrew University Medical Center	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Jun 20, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001142759

Hadassah Hebrew University Medical Center

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Jun 20, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Hadassah Hebrew University Medical Center, SCV001142759.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Apr 23, 2022

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