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NM_004360.5(CDH1):c.2635G>A (p.Gly879Ser) AND not provided

Germline classification:
Likely benign (5 submissions)
Last evaluated:
Jun 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000985661.26

Allele description [Variation Report for NM_004360.5(CDH1):c.2635G>A (p.Gly879Ser)]

NM_004360.5(CDH1):c.2635G>A (p.Gly879Ser)

Gene:
CDH1:cadherin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q22.1
Genomic location:
Preferred name:
NM_004360.5(CDH1):c.2635G>A (p.Gly879Ser)
Other names:
p.G879S:GGC>AGC
HGVS:
  • NC_000016.10:g.68833485G>A
  • NG_008021.1:g.101194G>A
  • NM_001317184.2:c.2452G>A
  • NM_001317185.2:c.1087G>A
  • NM_001317186.2:c.670G>A
  • NM_004360.5:c.2635G>AMANE SELECT
  • NP_001304113.1:p.Gly818Ser
  • NP_001304114.1:p.Gly363Ser
  • NP_001304115.1:p.Gly224Ser
  • NP_004351.1:p.Gly879Ser
  • LRG_301t1:c.2635G>A
  • LRG_301:g.101194G>A
  • NC_000016.9:g.68867388G>A
  • NM_004360.3:c.2635G>A
  • NM_004360.4:c.2635G>A
  • p.G879S
  • NM_004360.4(CDH1):c.2635G>A
Protein change:
G224S
Links:
dbSNP: rs200911775
NCBI 1000 Genomes Browser:
rs200911775
Molecular consequence:
  • NM_001317184.2:c.2452G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317185.2:c.1087G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317186.2:c.670G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004360.5:c.2635G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000149768GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Oct 19, 2020)
germlineclinical testing

Citation Link,

SCV001134088Quest Diagnostics Nichols Institute San Juan Capistrano
criteria provided, single submitter

(Quest Diagnostics criteria)
Likely benign
(Dec 3, 2022)
unknownclinical testing

PubMed (6)
[See all records that cite these PMIDs]

SCV002035131Genome Diagnostics Laboratory, Amsterdam University Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV002035896Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV002545806CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Jun 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes2not providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Identification of a Variety of Mutations in Cancer Predisposition Genes in Patients With Suspected Lynch Syndrome.

Yurgelun MB, Allen B, Kaldate RR, Bowles KR, Judkins T, Kaushik P, Roa BB, Wenstrup RJ, Hartman AR, Syngal S.

Gastroenterology. 2015 Sep;149(3):604-13.e20. doi: 10.1053/j.gastro.2015.05.006. Epub 2015 May 14.

PubMed [citation]
PMID:
25980754
PMCID:
PMC4550537

Sequence-based detection of mutations in cadherin 1 to determine the prevalence of germline mutations in patients with invasive lobular carcinoma of the breast.

Valente AL, Rummel S, Shriver CD, Ellsworth RE.

Hered Cancer Clin Pract. 2014;12(1):17. doi: 10.1186/1897-4287-12-17.

PubMed [citation]
PMID:
25067988
PMCID:
PMC4110519
See all PubMed Citations (6)

Details of each submission

From GeneDx, SCV000149768.16

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 26123647, 25067988, 25980754, 25925381, 30287823)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV001134088.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (6)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Genome Diagnostics Laboratory, Amsterdam University Medical Center - VKGL Data-share Consensus, SCV002035131.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus, SCV002035896.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV002545806.16

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided

Description

CDH1: BP1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided2not providednot providednot provided

Last Updated: Oct 20, 2024