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NM_005585.5(SMAD6):c.1024C>T (p.Arg342Cys) AND Joubert syndrome 9

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 25, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000985000.1

Allele description [Variation Report for NM_005585.5(SMAD6):c.1024C>T (p.Arg342Cys)]

NM_005585.5(SMAD6):c.1024C>T (p.Arg342Cys)

Gene:
SMAD6:SMAD family member 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q22.31
Genomic location:
Preferred name:
NM_005585.5(SMAD6):c.1024C>T (p.Arg342Cys)
HGVS:
  • NC_000015.10:g.66781068C>T
  • NG_012244.1:g.83733C>T
  • NG_012244.2:g.83733C>T
  • NM_005585.5:c.1024C>TMANE SELECT
  • NP_005576.3:p.Arg342Cys
  • NC_000015.9:g.67073406C>T
  • NM_005585.4:c.1024C>T
  • NR_027654.2:n.2179C>T
Protein change:
R342C
Links:
dbSNP: rs1333091798
NCBI 1000 Genomes Browser:
rs1333091798
Molecular consequence:
  • NM_005585.5:c.1024C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_027654.2:n.2179C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Joubert syndrome 9 (JBTS9)
Identifiers:
MONDO: MONDO:0012849; MedGen: C2676788; Orphanet: 2318; OMIM: 612285

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001132929Biochemical Molecular Genetic Laboratory, King Abdulaziz Medical City
no assertion criteria provided
Uncertain significance
(Aug 25, 2019)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Biochemical Molecular Genetic Laboratory, King Abdulaziz Medical City, SCV001132929.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022