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NM_002617.4(PEX10):c.600+1G>A AND Peroxisome biogenesis disorder 6B

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 10, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000983989.1

Allele description [Variation Report for NM_002617.4(PEX10):c.600+1G>A]

NM_002617.4(PEX10):c.600+1G>A

Gene:
PEX10:peroxisomal biogenesis factor 10 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p36.32
Genomic location:
Preferred name:
NM_002617.4(PEX10):c.600+1G>A
HGVS:
  • NC_000001.11:g.2408451C>T
  • NG_008342.1:g.9121G>A
  • NM_001374425.1:c.600+1G>A
  • NM_001374426.1:c.168+1G>A
  • NM_001374427.1:c.168+1G>A
  • NM_002617.4:c.600+1G>AMANE SELECT
  • NM_153818.2:c.600+1G>A
  • NC_000001.10:g.2339890C>T
  • NM_002617.3:c.600+1G>A
  • NM_153818.1:c.600+1G>A
Note:
NCBI staff reviewed the sequence information reported in PubMed 9683594 to determine the location of this allele on the current reference sequence.
Nucleotide change:
IVS, G-A, +1
Links:
OMIM: 602859.0001; dbSNP: rs267608183
NCBI 1000 Genomes Browser:
rs267608183
Molecular consequence:
  • NM_001374425.1:c.600+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001374426.1:c.168+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001374427.1:c.168+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_002617.4:c.600+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_153818.2:c.600+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:
Peroxisome biogenesis disorder 6B (PBD6B)
Identifiers:
MONDO: MONDO:0013937; MedGen: C3553948; Orphanet: 44; OMIM: 614871

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000790311Counsyl
no assertion criteria provided
Pathogenic
(Mar 10, 2017)
unknownclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease.

Xiong HY, Alipanahi B, Lee LJ, Bretschneider H, Merico D, Yuen RK, Hua Y, Gueroussov S, Najafabadi HS, Hughes TR, Morris Q, Barash Y, Krainer AR, Jojic N, Scherer SW, Blencowe BJ, Frey BJ.

Science. 2015 Jan 9;347(6218):1254806. doi: 10.1126/science.1254806. Epub 2014 Dec 18.

PubMed [citation]
PMID:
25525159
PMCID:
PMC4362528

Genetic classification and mutational spectrum of more than 600 patients with a Zellweger syndrome spectrum disorder.

Ebberink MS, Mooijer PA, Gootjes J, Koster J, Wanders RJ, Waterham HR.

Hum Mutat. 2011 Jan;32(1):59-69. doi: 10.1002/humu.21388.

PubMed [citation]
PMID:
21031596
See all PubMed Citations (3)

Details of each submission

From Counsyl, SCV000790311.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024