NM_005664.4(MKRN3):c.153G>A (p.Ala51=) AND not provided

Germline classification:: Likely benign (1 submission)
Last evaluated:: May 21, 2018
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000920710.4

Allele description [Variation Report for NM_005664.4(MKRN3):c.153G>A (p.Ala51=)]

NM_005664.4(MKRN3):c.153G>A (p.Ala51=)

Gene:

MKRN3:makorin ring finger protein 3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

15q11.2

Genomic location:

Preferred name:

NM_005664.4(MKRN3):c.153G>A (p.Ala51=)

HGVS:

NC_000015.10:g.23565935G>A
NG_012875.3:g.5629G>A
NM_005664.4:c.153G>AMANE SELECT
NP_005655.1:p.Ala51=
LRG_1045t1:c.153G>A
LRG_1045:g.5629G>A
LRG_1045p1:p.Ala51=
NC_000015.9:g.23811082G>A
NM_005664.3:c.153G>A

Links:

dbSNP: rs759147640

NCBI 1000 Genomes Browser:

rs759147640

Molecular consequence:

NM_005664.4:c.153G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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photosystem II protein D1 (chloroplast) [Angiopteris yunnanensis]
photosystem II protein D1 (chloroplast) [Angiopteris yunnanensis]
gi|1980529649|ref|YP_009992406.1|

Protein
Nothophoma sp. DSM-2023a voucher HKAS:102216 internal transcribed spacer 1, part...
Nothophoma sp. DSM-2023a voucher HKAS:102216 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence
gi|2531665314|gb|OR233602.1|

Nucleotide
PREDICTED: Homo sapiens zinc finger protein 292 (ZNF292), transcript variant X2,...
PREDICTED: Homo sapiens zinc finger protein 292 (ZNF292), transcript variant X2, mRNA
gi|2217360464|ref|XM_047418456.1|

Nucleotide
photosystem II reaction center protein D1 (chloroplast) [Chlorosarcinopsis eremi...
photosystem II reaction center protein D1 (chloroplast) [Chlorosarcinopsis eremi]
gi|1737759224|gb|QEP09218.1|

Protein
mortality factor 4-like protein 2 [Homo sapiens]
mortality factor 4-like protein 2 [Homo sapiens]
gi|215490033|ref|NP_001135896.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001066087	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (May 21, 2018)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001066087

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(May 21, 2018)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001066087.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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