NM_000251.3(MSH2):c.942+24_942+29del AND not provided

Germline classification:: Benign (2 submissions)
Last evaluated:: Nov 8, 2023
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000861684.20

Allele description [Variation Report for NM_000251.3(MSH2):c.942+24_942+29del]

NM_000251.3(MSH2):c.942+24_942+29del

Gene:

MSH2:mutS homolog 2 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

2p21

Genomic location:

Preferred name:

NM_000251.3(MSH2):c.942+24_942+29del

HGVS:

NC_000002.11:g.47641581_47641586delAAAAAA
NC_000002.12:g.47414421_47414426del
NC_000002.12:g.47414442_47414447del
NG_007110.2:g.16319_16324del
NM_000251.2:c.942+24_942+29del6
NM_000251.3:c.942+24_942+29delMANE SELECT
NM_001258281.1:c.744+24_744+29del
LRG_218t1:c.942+24_942+29del
LRG_218:g.16319_16324del
NC_000002.11:g.47641560_47641565delAAAAAA
NC_000002.11:g.47641581_47641586del
NC_000002.11:g.47641581_47641586del
NC_000002.11:g.47641581_47641586delAAAAAA
NC_000002.12:g.47414442_47414447del
NM_000251.1:c.942+3_942+8delAAAAAA
NM_000251.2:c.942+10_942+15delAAAAAA
NM_000251.2:c.942+24_942+29del
NM_000251.2:c.942+24_942+29del6
NM_000251.3:c.942+24_942+29del
NM_000251.3:c.942+24_942+29delAAAAAAMANE SELECT

Links:

dbSNP: rs11309117

NCBI 1000 Genomes Browser:

rs11309117

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001002066	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Benign (May 22, 2017)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV001158896	ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories	criteria provided, single submitter (ARUP Molecular Germline Variant Investigation Process 2024)	Benign (Nov 8, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001002066

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Benign
(May 22, 2017)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001158896

ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories

criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2024)

Benign
(Nov 8, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001002066.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV001158896.6

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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