NM_024675.4(PALB2):c.3054G>C (p.Glu1018Asp) AND not provided

Germline classification:: Likely benign (2 submissions)
Last evaluated:: Oct 23, 2020
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000858970.24

Allele description [Variation Report for NM_024675.4(PALB2):c.3054G>C (p.Glu1018Asp)]

NM_024675.4(PALB2):c.3054G>C (p.Glu1018Asp)

Gene:

PALB2:partner and localizer of BRCA2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16p12.2

Genomic location:

Preferred name:

NM_024675.4(PALB2):c.3054G>C (p.Glu1018Asp)

Other names:

p.E1018D:GAG>GAC; NM_024675.3(PALB2):c.3054G>C; p.Glu1018Asp

HGVS:

NC_000016.10:g.23621421C>G
NG_007406.1:g.24937G>C
NM_024675.4:c.3054G>CMANE SELECT
NP_078951.2:p.Glu1018Asp
NP_078951.2:p.Glu1018Asp
LRG_308t1:c.3054G>C
LRG_308:g.24937G>C
LRG_308p1:p.Glu1018Asp
NC_000016.9:g.23632742C>G
NM_024675.3:c.3054G>C
p.E1018D

Protein change:

E1018D

Links:

dbSNP: rs183489969

NCBI 1000 Genomes Browser:

rs183489969

Molecular consequence:

NM_024675.4:c.3054G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000211527	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (Oct 23, 2020)	germline	clinical testing	Citation Link,
SCV001474440	ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories	criteria provided, single submitter (ARUP Molecular Germline Variant Investigation Process)	Likely benign (Sep 4, 2019)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000211527

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Likely benign
(Oct 23, 2020)

germline

clinical testing

Citation Link,

SCV001474440

ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories

criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process)

Likely benign
(Sep 4, 2019)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000211527.12

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is associated with the following publications: (PMID: 28825143, 21285249, 22241545, 25575445, 26283626, 23977390, 25356972, 26489409, 26692951, 27783279, 26411315, 27616075, 28580595, 27099641, 26757417, 28664506, 31159747, 31586400, 32566746, 32426482)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV001474440.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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