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NM_000527.5(LDLR):c.2140+5G>A AND not provided

Germline classification:
Benign (4 submissions)
Last evaluated:
Jul 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000858033.23

Allele description [Variation Report for NM_000527.5(LDLR):c.2140+5G>A]

NM_000527.5(LDLR):c.2140+5G>A

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.2140+5G>A
Other names:
IVS14 ds G-A +5; .
HGVS:
  • NC_000019.10:g.11120527G>A
  • NG_009060.1:g.36147G>A
  • NM_000527.5:c.2140+5G>AMANE SELECT
  • NM_001195798.2:c.2140+5G>A
  • NM_001195799.2:c.2017+5G>A
  • NM_001195800.2:c.1636+5G>A
  • NM_001195803.2:c.1606+294G>A
  • LRG_274t1:c.2140+5G>A
  • LRG_274:g.36147G>A
  • NC_000019.9:g.11231203G>A
  • NM_000527.4:c.2140+5G>A
  • c.2140+5G>A
Links:
LDLR-LOVD, British Heart Foundation: LDLR_000283;
Molecular consequence:
  • NM_000527.5:c.2140+5G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195798.2:c.2140+5G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195799.2:c.2017+5G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195800.2:c.1636+5G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195803.2:c.1606+294G>A - intron variant - [Sequence Ontology: SO:0001627]
Observations:
36

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001134260Quest Diagnostics Nichols Institute San Juan Capistrano
criteria provided, single submitter

(Quest Diagnostics criteria)
Benign
(Dec 22, 2022)
unknownclinical testing

PubMed (24)
[See all records that cite these PMIDs]

SCV001970991Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV002546066CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Benign
(Jul 1, 2024)
germlineclinical testing

Citation Link,

SCV004563880ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2024)
Benign
(Sep 29, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes36not providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Molecular characterization of familial hypercholesterolemia in German and Greek patients.

Dedoussis GV, Genschel J, Bochow B, Pitsavos C, Skoumas J, Prassa M, Lkhagvasuren S, Toutouzas P, Vogt A, Kassner U, Thomas HP, Schmidt H.

Hum Mutat. 2004 Mar;23(3):285-6.

PubMed [citation]
PMID:
14974088

Molecular genetic analysis of 1053 Danish individuals with clinical signs of familial hypercholesterolemia.

Brusgaard K, Jordan P, Hansen H, Hansen AB, Hørder M.

Clin Genet. 2006 Mar;69(3):277-83.

PubMed [citation]
PMID:
16542394
See all PubMed Citations (24)

Details of each submission

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV001134260.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (24)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001970991.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV002546066.14

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided36not providednot providedclinical testingnot provided

Description

LDLR: BS1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided36not providednot providednot provided

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV004563880.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 11, 2024