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NM_001134407.3(GRIN2A):c.2190C>T (p.Tyr730=) AND not provided

Germline classification:
Benign (2 submissions)
Last evaluated:
Mar 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000857891.25

Allele description [Variation Report for NM_001134407.3(GRIN2A):c.2190C>T (p.Tyr730=)]

NM_001134407.3(GRIN2A):c.2190C>T (p.Tyr730=)

Gene:
GRIN2A:glutamate ionotropic receptor NMDA type subunit 2A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p13.2
Genomic location:
Preferred name:
NM_001134407.3(GRIN2A):c.2190C>T (p.Tyr730=)
Other names:
p.Y730Y:TAC>TAT
HGVS:
  • NC_000016.10:g.9798443G>A
  • NG_011812.2:g.389312C>T
  • NM_000833.5:c.2190C>T
  • NM_001134407.3:c.2190C>TMANE SELECT
  • NM_001134408.2:c.2190C>T
  • NP_000824.1:p.Tyr730=
  • NP_001127879.1:p.Tyr730=
  • NP_001127880.1:p.Tyr730=
  • NC_000016.9:g.9892300G>A
  • NG_011812.1:g.389312C>T
  • NM_000833.3:c.2190C>T
  • NM_000833.4:c.2190C>T
  • NM_001134407.2:c.2190C>T
Links:
dbSNP: rs61753382
NCBI 1000 Genomes Browser:
rs61753382
Molecular consequence:
  • NM_000833.5:c.2190C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001134407.3:c.2190C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001134408.2:c.2190C>T - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
31

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001144084Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)
Benign
(Mar 29, 2019)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

SCV001747762CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Benign
(Mar 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes31not providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

GRIN2A mutations cause epilepsy-aphasia spectrum disorders.

Carvill GL, Regan BM, Yendle SC, O'Roak BJ, Lozovaya N, Bruneau N, Burnashev N, Khan A, Cook J, Geraghty E, Sadleir LG, Turner SJ, Tsai MH, Webster R, Ouvrier R, Damiano JA, Berkovic SF, Shendure J, Hildebrand MS, Szepetowski P, Scheffer IE, Mefford HC.

Nat Genet. 2013 Sep;45(9):1073-6. doi: 10.1038/ng.2727. Epub 2013 Aug 11.

PubMed [citation]
PMID:
23933818
PMCID:
PMC3868952

Assessment of NMDA receptor genes (GRIN2A, GRIN2B and GRIN2C) as candidate genes in the development of degenerative lumbar scoliosis.

Kim KT, Kim J, Han YJ, Kim JH, Lee JS, Chung JH.

Exp Ther Med. 2013 Mar;5(3):977-981. Epub 2013 Jan 21.

PubMed [citation]
PMID:
23408766
PMCID:
PMC3570245
See all PubMed Citations (3)

Details of each submission

From Athena Diagnostics, SCV001144084.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV001747762.15

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided31not providednot providedclinical testingnot provided

Description

GRIN2A: BP4, BP7, BS1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided31not providednot providednot provided

Last Updated: Jun 9, 2024