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NM_015466.4(PTPN23):c.695G>A (p.Arg232Gln) AND multiple conditions

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Feb 15, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000853209.2

Allele description [Variation Report for NM_015466.4(PTPN23):c.695G>A (p.Arg232Gln)]

NM_015466.4(PTPN23):c.695G>A (p.Arg232Gln)

Gene:
PTPN23:protein tyrosine phosphatase non-receptor type 23 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p21.31
Genomic location:
Preferred name:
NM_015466.4(PTPN23):c.695G>A (p.Arg232Gln)
HGVS:
  • NC_000003.12:g.47406548G>A
  • NG_051056.1:g.30567G>A
  • NM_001304482.2:c.317G>A
  • NM_015466.4:c.695G>AMANE SELECT
  • NP_001291411.1:p.Arg106Gln
  • NP_056281.1:p.Arg232Gln
  • NC_000003.11:g.47448038G>A
  • NM_015466.2:c.695G>A
Protein change:
R106Q
Links:
dbSNP: rs577689618
NCBI 1000 Genomes Browser:
rs577689618
Molecular consequence:
  • NM_001304482.2:c.317G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_015466.4:c.695G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Global developmental delay (DD)
Identifiers:
MedGen: C0557874; Human Phenotype Ontology: HP:0001263
Name:
Brain atrophy
Identifiers:
MedGen: C4551584; Human Phenotype Ontology: HP:0012444

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000927116Regeneron Genetics Center, Regeneron
no assertion criteria provided
Likely pathogenic
(Feb 15, 2019)
germlineresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Hispanicgermlineyesnot providednot providednot providednot providednot providedresearch

Details of each submission

From Regeneron Genetics Center, Regeneron, SCV000927116.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Hispanicnot providednot providednot providedresearchnot provided

Description

Identified in cohort of patients with neurodevelopmental disorder accompanied by structural brain abnormalities

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024