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NM_000719.7(CACNA1C):c.5665C>T (p.Arg1889Cys) AND Arrhythmogenic right ventricular cardiomyopathy

Germline classification:
Likely benign (1 submission)
Last evaluated:
Aug 16, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000852666.9

Allele description [Variation Report for NM_000719.7(CACNA1C):c.5665C>T (p.Arg1889Cys)]

NM_000719.7(CACNA1C):c.5665C>T (p.Arg1889Cys)

Genes:
CACNA1C-AS1:CACNA1C antisense RNA 1 [Gene - HGNC]
CACNA1C:calcium voltage-gated channel subunit alpha1 C [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12p13.33
Genomic location:
Preferred name:
NM_000719.7(CACNA1C):c.5665C>T (p.Arg1889Cys)
Other names:
p.R1889C:CGC>TGC
HGVS:
  • NC_000012.12:g.2685827C>T
  • NG_008801.2:g.720042C>T
  • NM_000719.7:c.5665C>TMANE SELECT
  • NM_001129827.2:c.5809C>T
  • NM_001129829.2:c.5788C>T
  • NM_001129830.3:c.5770C>T
  • NM_001129831.2:c.5749C>T
  • NM_001129832.2:c.5725C>T
  • NM_001129833.2:c.5722C>T
  • NM_001129834.2:c.5722C>T
  • NM_001129835.2:c.5722C>T
  • NM_001129836.2:c.5716C>T
  • NM_001129837.2:c.5689C>T
  • NM_001129838.2:c.5689C>T
  • NM_001129839.2:c.5683C>T
  • NM_001129840.2:c.5665C>T
  • NM_001129841.2:c.5665C>T
  • NM_001129842.2:c.5665C>T
  • NM_001129843.2:c.5665C>T
  • NM_001129844.2:c.5656C>T
  • NM_001129846.2:c.5632C>T
  • NM_001167623.2:c.5665C>T
  • NM_001167624.3:c.5770C>T
  • NM_001167625.2:c.5845C>T
  • NM_199460.4:c.5914C>T
  • NP_000710.5:p.Arg1889Cys
  • NP_001123299.1:p.Arg1937Cys
  • NP_001123301.1:p.Arg1930Cys
  • NP_001123302.2:p.Arg1924Cys
  • NP_001123303.1:p.Arg1917Cys
  • NP_001123304.1:p.Arg1909Cys
  • NP_001123305.1:p.Arg1908Cys
  • NP_001123306.1:p.Arg1908Cys
  • NP_001123307.1:p.Arg1908Cys
  • NP_001123308.1:p.Arg1906Cys
  • NP_001123309.1:p.Arg1897Cys
  • NP_001123310.1:p.Arg1897Cys
  • NP_001123311.1:p.Arg1895Cys
  • NP_001123312.1:p.Arg1889Cys
  • NP_001123313.1:p.Arg1889Cys
  • NP_001123314.1:p.Arg1889Cys
  • NP_001123315.1:p.Arg1889Cys
  • NP_001123316.1:p.Arg1886Cys
  • NP_001123318.1:p.Arg1878Cys
  • NP_001161095.1:p.Arg1889Cys
  • NP_001161096.2:p.Arg1924Cys
  • NP_001161097.1:p.Arg1949Cys
  • NP_955630.3:p.Arg1972Cys
  • LRG_334t1:c.5665C>T
  • LRG_334:g.720042C>T
  • LRG_334p1:p.Arg1889Cys
  • NC_000012.11:g.2794993C>T
  • NM_000719.6:c.5665C>T
Protein change:
R1878C
Links:
dbSNP: rs185788586
NCBI 1000 Genomes Browser:
rs185788586
Molecular consequence:
  • NM_000719.7:c.5665C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129827.2:c.5809C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129829.2:c.5788C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129830.3:c.5770C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129831.2:c.5749C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129832.2:c.5725C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129833.2:c.5722C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129834.2:c.5722C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129835.2:c.5722C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129836.2:c.5716C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129837.2:c.5689C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129838.2:c.5689C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129839.2:c.5683C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129840.2:c.5665C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129841.2:c.5665C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129842.2:c.5665C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129843.2:c.5665C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129844.2:c.5656C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001129846.2:c.5632C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001167623.2:c.5665C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001167624.3:c.5770C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001167625.2:c.5845C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_199460.4:c.5914C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Arrhythmogenic right ventricular cardiomyopathy (ARVD)
Synonyms:
Cardiomyopathy, ARVC; Arrhythmogenic right ventricular dysplasia
Identifiers:
MONDO: MONDO:0016587; MeSH: D019571; MedGen: C0349788

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000995373Center for Advanced Laboratory Medicine, UC San Diego Health, University of California San Diego
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benign
(Aug 16, 2017) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Advanced Laboratory Medicine, UC San Diego Health, University of California San Diego, SCV000995373.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Nov 3, 2024