NM_001060.6(TBXA2R):c.848C>G (p.Ser283Cys) AND Abnormal platelet aggregation

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Feb 1, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000851900.1

Allele description [Variation Report for NM_001060.6(TBXA2R):c.848C>G (p.Ser283Cys)]

NM_001060.6(TBXA2R):c.848C>G (p.Ser283Cys)

Gene:

TBXA2R:thromboxane A2 receptor [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

19p13.3

Genomic location:

Preferred name:

NM_001060.6(TBXA2R):c.848C>G (p.Ser283Cys)

HGVS:

NC_000019.10:g.3595872G>C
NG_013363.1:g.15962C>G
NM_001060.6:c.848C>GMANE SELECT
NM_201636.3:c.848C>G
NP_001051.1:p.Ser283Cys
NP_001051.1:p.Ser283Cys
NP_963998.2:p.Ser283Cys
LRG_578t1:c.848C>G
LRG_578:g.15962C>G
LRG_578p1:p.Ser283Cys
NC_000019.9:g.3595870G>C
NM_001060.5:c.848C>G

Protein change:

S283C

Links:

dbSNP: rs201364793

NCBI 1000 Genomes Browser:

rs201364793

Molecular consequence:

NM_001060.6:c.848C>G - missense variant - [Sequence Ontology: SO:0001583]
NM_201636.3:c.848C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Abnormal platelet aggregation
Identifiers:: MedGen: C0541767; Human Phenotype Ontology: HP:0030402

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000899965	NIHR Bioresource Rare Diseases, University of Cambridge - ThromboGenomics	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Feb 1, 2019)	unknown	research	PubMed (2) [See all records that cite these PMIDs] 25741868, 31064749

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000899965

NIHR Bioresource Rare Diseases, University of Cambridge - ThromboGenomics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Feb 1, 2019)

unknown

research

PubMed (2)
[See all records that cite these PMIDs]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
European,South-Asian	unknown	yes	1	not provided	not provided	1	not provided	research

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Diagnostic high-throughput sequencing of 2396 patients with bleeding, thrombotic, and platelet disorders.

Downes K, Megy K, Duarte D, Vries M, Gebhart J, Hofer S, Shamardina O, Deevi SVV, Stephens J, Mapeta R, Tuna S, Al Hasso N, Besser MW, Cooper N, Daugherty L, Gleadall N, Greene D, Haimel M, Martin H, Papadia S, Revel-Vilk S, Sivapalaratnam S, et al.

Blood. 2019 Dec 5;134(23):2082-2091. doi: 10.1182/blood.2018891192.

PubMed [citation]

PMID:: 31064749
PMCID:: PMC6993014

Details of each submission

From NIHR Bioresource Rare Diseases, University of Cambridge - ThromboGenomics, SCV000899965.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	European,South-Asian	1	not provided	not provided	research	PubMed (2)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	1	not provided	not provided		1	not provided	not provided	not provided

Last Updated: Apr 23, 2022

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