GRCh37/hg19 17q21.32(chr17:47207656-47228423)x1 AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Dec 12, 2017
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000846718.2

Allele description [Variation Report for GRCh37/hg19 17q21.32(chr17:47207656-47228423)x1]

GRCh37/hg19 17q21.32(chr17:47207656-47228423)x1

Gene:: B4GALNT2:beta-1,4-N-acetyl-galactosaminyltransferase 2 [Gene - OMIM - HGNC]
Variant type:: copy number loss
Cytogenetic location:: 17q21.32
Genomic location:: Chr17: 47207656 - 47228423 (on Assembly GRCh37)
Preferred name:: GRCh37/hg19 17q21.32(chr17:47207656-47228423)x1
HGVS:: NC_000017.10:g.(?_47207656)_(47228423_?)del
This HGVS expression did not pass validation

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: CN517202

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PREDICTED: Homo sapiens beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood...
PREDICTED: Homo sapiens beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood group) (B4GALNT2), transcript variant X2, mRNA
gi|2217309908|ref|XM_011524314.3|

Nucleotide
Homo sapiens cDNA clone IMAGE:9052740, containing frame-shift errors
Homo sapiens cDNA clone IMAGE:9052740, containing frame-shift errors
gi|219518188|gb|BC144220.1|

Nucleotide
Dikarya small subunit ribosomal RNA gene and internal transcribed spacer 1, part...
Dikarya small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
PopSet: 1149552660

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000988840	Bionano Laboratories	no assertion criteria provided	Uncertain significance (Dec 12, 2017)	unknown	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000988840

Bionano Laboratories

no assertion criteria provided

Uncertain significance
(Dec 12, 2017)

unknown

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Bionano Laboratories, SCV000988840.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	Buccal	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 11, 2022

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